Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14e14
(534 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 192 1e-49
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 90 1e-18
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 83 1e-16
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 78 3e-15
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 74 6e-14
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 66 2e-11
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 44 7e-05
U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z75714-4|CAB00062.1| 360|Caenorhabditis elegans Hypothetical pr... 29 2.1
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 29 2.1
Z68006-7|CAA91995.2| 783|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF497831-1|AAM18109.1| 783|Caenorhabditis elegans putative Na-H... 29 2.8
U23177-7|AAM22053.1| 867|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z83125-9|CAB05624.1| 338|Caenorhabditis elegans Hypothetical pr... 27 6.4
AF038608-2|AAU05595.1| 297|Caenorhabditis elegans Serpentine re... 27 6.4
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 192 bits (469), Expect = 1e-49
Identities = 86/139 (61%), Positives = 114/139 (82%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
GL+ADAR+L++RA+IECQS+KLT+EDPVT+ YI+RYIA KQ++TQS GRRPFGIS LIG
Sbjct: 76 GLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIG 135
Query: 352 GFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIRA 173
GFD+DG+P LF+TEPSG YYE+ ANATGR K VRE+LE+ Y+ + E +KL +++
Sbjct: 136 GFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENTVDEATTLKLVVKS 195
Query: 172 LLEVVQSGQKNLEIAVMRR 116
L +VV G +N+EIAVM++
Sbjct: 196 LAQVVPPGSQNIEIAVMKK 214
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 89.8 bits (213), Expect = 1e-18
Identities = 54/140 (38%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Frame = -3
Query: 532 GLTADARILINRAQ-IECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 356
G+ D RIL+ +A+ I + + E+ T++ +T IA + Q+YTQS G RPFG S LI
Sbjct: 74 GMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTD-IAAVMQEYTQSGGVRPFGASLLI 132
Query: 355 GGFDYD-GSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAI 179
G+D + G P LFQ +PSG Y+ WKA A G++ + FLEK ++ E + + A+
Sbjct: 133 AGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFS--EALELDDGIHTAL 190
Query: 178 RALLEVVQSG--QKNLEIAV 125
L E G + N+E+AV
Sbjct: 191 LTLRESFDVGMNENNVEVAV 210
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 83.0 bits (196), Expect = 1e-16
Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 2/149 (1%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
G+TADA ILIN + S++ + + + +E + + + KQ+YTQ G+RPFG+S L
Sbjct: 78 GITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYI 137
Query: 352 GFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIRA 173
G+D L+Q++PSG Y WKA G + + L++ Y + + A +LAI+
Sbjct: 138 GWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYKSPNL---EEAKQLAIKV 194
Query: 172 LLEV--VQSGQKNLEIAVMRRGQPMQMLD 92
L + V+ + +E+AV+ R +L+
Sbjct: 195 LWKTLDVKLASEKVEMAVLTRRDGKTVLE 223
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 78.2 bits (184), Expect = 3e-15
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
GL +D RIL Q EC S + + V ++ + + Q TQ GRRPFG+ LI
Sbjct: 76 GLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGILIA 135
Query: 352 GFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIRA 173
G+D DG+ H+ QT+PS + G +++ R +LE+N E +T + A+ A
Sbjct: 136 GYDKDGA-HIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQLIVHALLA 194
Query: 172 LLEVVQSGQ----KNLEIAVMRRGQPMQMLD 92
L + + + + +N I ++ + P +L+
Sbjct: 195 LRDTLPAEENLNAQNTSIGIVGKDSPFSLLE 225
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 74.1 bits (174), Expect = 6e-14
Identities = 44/144 (30%), Positives = 82/144 (56%), Gaps = 6/144 (4%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKY----TQSNGRRPFGIS 365
GL AD+R L+ RAQIE Q+ T + +E +T+ +A L ++ +++ RPFG++
Sbjct: 80 GLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFGVA 139
Query: 364 CLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKL 185
L G D +G+ LF +PSG + + KA + G ++ + L++ Y D + + G +K+
Sbjct: 140 MLFAGVDQEGA-KLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQY-HDALTIKEG-LKM 196
Query: 184 AIRALLEVVQS--GQKNLEIAVMR 119
A+ L +V++ N+E+ V++
Sbjct: 197 ALAILKQVMEEKLNSANVEVVVIK 220
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 65.7 bits (153), Expect = 2e-11
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 2/141 (1%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
G+ DA+ I RAQ E S K + E + + +A L Q YTQ+ R G + L
Sbjct: 82 GMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFI 141
Query: 352 GFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIRA 173
+D + P +++ +P+G Y K + G FLEK T A++LAI A
Sbjct: 142 SYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEA 201
Query: 172 LLEV--VQSGQKNLEIAVMRR 116
L + K+LE+ V+ +
Sbjct: 202 LQTSLGIDVRSKDLEVVVVTK 222
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 44.0 bits (99), Expect = 7e-05
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
Frame = -3
Query: 520 DARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDY 341
D L N A E +P+ ++ I +A +T R PFG ++
Sbjct: 84 DGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHTLGISR-PFGAGAFFMSWNK 142
Query: 340 DGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIRALLEV 161
LF EPSG+ YE+KA A G+ + + +EK E N VK A R ++ V
Sbjct: 143 QTGGRLFLVEPSGLNYEYKAWAVGKHRQAAKAEIEK--LKIEELDVNQLVKEAARIIMVV 200
Query: 160 -VQSGQKNLEI 131
++ KN++I
Sbjct: 201 RDENKDKNVQI 211
>U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical
protein F55D10.1 protein.
Length = 955
Score = 29.5 bits (63), Expect = 1.6
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = -3
Query: 460 EDPVTLEYITRY---IAGLKQKYTQSNGRRPFGISCLIGGFDYDGSPHLFQTEP-SGIYY 293
++P+T E++TRY + Q +T SNGR+ + FD S TEP +G YY
Sbjct: 689 KNPITKEFVTRYTTEVHSKNQSFTDSNGRQ-----AMERFFDGATSFEYSDTEPIAGNYY 743
>Z75714-4|CAB00062.1| 360|Caenorhabditis elegans Hypothetical
protein ZC434.8 protein.
Length = 360
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = -3
Query: 268 RSAKTVREFLEKNYTADEVATENGAVKLAIRA-LLEVVQSGQKNLEIAV 125
+ A L+K+ T D VA +N + K + A LL+V+QSG +NL+ V
Sbjct: 19 QGASDCSSLLKKHLTKDVVA-KNKSKKTRLGATLLDVIQSGGENLDSGV 66
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/114 (19%), Positives = 45/114 (39%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
G AD + + + A+ + +T PVT+ ++ Y R S L+
Sbjct: 70 GSAADTQAIADIAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNY-----REQLSASVLVA 124
Query: 352 GFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAV 191
G+D + ++ G ++ A+G + V+ FL+ + + E A+
Sbjct: 125 GWDEELGGQVYAIPIGGFVSRQRSTASGSGSTFVQGFLDSQWRPNLTLEECKAI 178
>Z68006-7|CAA91995.2| 783|Caenorhabditis elegans Hypothetical
protein K09C8.1 protein.
Length = 783
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 265 SAKTVREFLEKNYTADEVATENGAVKL 185
S K VR LEKNYTA++ E V+L
Sbjct: 568 SKKYVRPLLEKNYTANKAKKEGKLVEL 594
>AF497831-1|AAM18109.1| 783|Caenorhabditis elegans putative Na-H
exchanger isoform 7 protein.
Length = 783
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 265 SAKTVREFLEKNYTADEVATENGAVKL 185
S K VR LEKNYTA++ E V+L
Sbjct: 568 SKKYVRPLLEKNYTANKAKKEGKLVEL 594
>U23177-7|AAM22053.1| 867|Caenorhabditis elegans Hypothetical
protein C56G2.1a protein.
Length = 867
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -3
Query: 301 IYYEWKANATGRSAKTVREF----LEKNYTADEVATENGAVKLA 182
++Y K + GR K V + L K TA +V TENG VK A
Sbjct: 124 VWYINKKDKDGRKKKKVGDVISNGLPKTATASDVQTENGNVKKA 167
>Z83125-9|CAB05624.1| 338|Caenorhabditis elegans Hypothetical
protein T15D6.11 protein.
Length = 338
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 269 TSCISFPFIIYT--RRFSLEQVW*TIIVESSYQTRNT 373
+SCI F F++YT RF + VW T+ E YQ + T
Sbjct: 19 SSCIVFGFVLYTFAPRFHTKIVWDTLDGE-GYQFKET 54
>AF038608-2|AAU05595.1| 297|Caenorhabditis elegans Serpentine
receptor, class z protein70 protein.
Length = 297
Score = 27.5 bits (58), Expect = 6.4
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +2
Query: 92 VKHLHWLTSSHYSNF*VLLARLY-YFQECSDSQLDSSILCSNFISGVIFL*KLSYCLCRS 268
VKH W+ + Y F L+ L+ + + S + ++F L CLC
Sbjct: 62 VKHFFWMVRTSYYFFIALIVVLFLQYPPLRNIIFYSLFIIDQTFELLLFSIALEKCLCTF 121
Query: 269 TSCISFPFIIYTRRFSLEQVW*TIIV 346
+ P+ R L+++W IV
Sbjct: 122 FPKLE-PYFTSARNSLLDKIWALYIV 146
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,152,984
Number of Sequences: 27780
Number of extensions: 237436
Number of successful extensions: 668
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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