Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14e13
(334 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 0.99
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 3.0
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 25 4.0
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom... 25 4.0
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 4.0
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 24 5.3
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 24 5.3
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp... 24 7.0
SPAC24C9.16c |cox8||cytochrome c oxidase subunit VIII|Schizosacc... 24 7.0
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 23 9.2
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 23 9.2
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 26.6 bits (56), Expect = 0.99
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 187 ENLPFDIHNRYKLTLYFILYAGSGLSAPYL 98
E F+++N Y LTL+ I++ AP++
Sbjct: 472 EKRSFEVNNMYSLTLFDIIFKSGMKIAPFI 501
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 25.0 bits (52), Expect = 3.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 152 LVTVVNVEG*ILARNTAVRMVSHEIRYHISTQFV 253
L+T NV +L R+ V ++ E YHI Q +
Sbjct: 233 LITGANVNTYLLERSRVVSLLKGERNYHIFYQLI 266
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 24.6 bits (51), Expect = 4.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 207 EWFLTKFVTTFLPSLFEMR 263
+WF TK + LPS+F++R
Sbjct: 16 KWFNTKLSSRDLPSVFDLR 34
>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 24.6 bits (51), Expect = 4.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 289 NVKMITPLTRISNKLGRN 236
NVK +TP RI N LG N
Sbjct: 134 NVKKLTPKARILNLLGYN 151
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 24.6 bits (51), Expect = 4.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 310 YLLENRRNVKMITPLTRISNKLGRNVVTN 224
YL R + TPL+ ISN L N V N
Sbjct: 214 YLESLREKRRTYTPLSEISNGLNSNGVEN 242
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 24.2 bits (50), Expect = 5.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 160 RYKLTLYFILYAGSGLS 110
RY+LTLY +LY S +S
Sbjct: 525 RYRLTLYIMLYTLSQIS 541
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 24.2 bits (50), Expect = 5.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 235 VVTNFVRNHSNGGIPGENLPF 173
+ +RN ++ G P ENLPF
Sbjct: 204 IALQMIRNINDLGTPDENLPF 224
>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 23.8 bits (49), Expect = 7.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 147 HCISSYMRALDYQHPISSPVTSF*RSNSSCRN 52
H +S ALD QH S + +F NSS N
Sbjct: 174 HEVSEAFFALDEQHTPRSKINTFMTVNSSILN 205
>SPAC24C9.16c |cox8||cytochrome c oxidase subunit
VIII|Schizosaccharomyces pombe|chr 1|||Manual
Length = 66
Score = 23.8 bits (49), Expect = 7.0
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -1
Query: 193 PGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRH 86
PG +PF I+ + TL + G S P+++ ++
Sbjct: 26 PGSTIPFYINKKPLPTLLYFGTFGVIFSIPFIVVKY 61
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 12 YRFFTSLNLKQAKDFCSL 65
Y +FTS N KQA++ S+
Sbjct: 470 YTYFTSDNAKQARELVSI 487
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 214 FSRNSLPHFYPVCLKCESV 270
F++N LPH LKC V
Sbjct: 842 FNKNLLPHSLEFILKCSKV 860
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,386,109
Number of Sequences: 5004
Number of extensions: 26435
Number of successful extensions: 83
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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