Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14e13
         (334 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   1.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   3.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   3.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   3.9  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    20   9.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   9.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 186  SPGIPPLEWFLTKFVTTFLPSLFEMRVSGVIIFTF 290
            +PGIPP   FL+   TT +  L     +G  I  F
Sbjct: 1498 APGIPPAATFLSPNSTTLVLRLHVWPDNGCPILYF 1532


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 186  SPGIPPLEWFLTKFVTTFLPSLFEMRVSGVIIFTF 290
            +PGIPP   FL+   TT +  L     +G  I  F
Sbjct: 1494 APGIPPAATFLSPNSTTLVLRLHVWPDNGCPILYF 1528


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 177 GRFSPGIPPLEWFLTKFVTTFLPSLFEMRVSGVIIFTF 290
           GRF P     E FLT     +L    E+R+    IFTF
Sbjct: 186 GRFVP-----EGFLTSCSFDYLTDTNEIRIFVATIFTF 218


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 228 VTTFLPSLFEMRVSGVIIFTFLRFSSRYHSKKQK 329
           V+T LP++F   VS +  + +     RY  + QK
Sbjct: 316 VSTMLPAVFAKTVSCIDPWIYAINHPRYRQELQK 349


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 228 VTTFLPSLFEMRVSGVIIFTFLRFSSRYHSKKQK 329
           V+T LP++F   VS +  + +     RY  + QK
Sbjct: 316 VSTMLPAVFAKTVSCIDPWIYAINHPRYRQELQK 349


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 223 FVRNHSNGGIPGENLPFDIHNRYKLTLYFIL 131
           FV NH       + L +    RYK+ + F+L
Sbjct: 304 FVDNHDTQRDNPQILTYKYSKRYKMAVAFML 334


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 211 GFSRNSLPHF 240
           GF + +LPHF
Sbjct: 262 GFRKRTLPHF 271


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 240 LPSLFEMRVSGVIIFTFLRFSSRYHSKKQK 329
           +PS F + V+ + + T L   SRY  K ++
Sbjct: 701 VPSKFCLSVTLLTVATSLVIVSRYAEKSRR 730


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,081
Number of Sequences: 438
Number of extensions: 1885
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)