Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14e11
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    31   0.15 
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   7.4  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    25   9.8  

>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 49  EFFYNTTQSYYILCELWNRLFEVVACPAIVCNVHSI-HIINVMSRVCDMALLSRQTSYSI 225
           EFF +   SY  L  +WN LF  +     VCN  SI H++  + R  D   L +Q + +I
Sbjct: 246 EFFLSGFLSYKSLF-VWNVLFAFILPRLYVCNERSIKHLVASLERSGDK--LKKQATETI 302

Query: 226 TTRIS 240
            T ++
Sbjct: 303 NTTVN 307


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 293 MNQSNNESTVESGLALPLALLTSMVDGNHSPP 388
           +N SNN S+   G  LP   LT + + ++ PP
Sbjct: 72  INNSNNSSSNTGGNVLPNPALTPVRNMSNKPP 103


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 378 WLPSTMDVSNARGRAKPLSTVDSLFD*FMIVLFSLHL-YIFHQC 250
           WL   + ++   G  K LST  S+F+   +V +S HL Y   +C
Sbjct: 572 WLVEALAMAGCSGYPKLLSTAVSMFE--DLVRYSSHLQYYSEEC 613


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,005
Number of Sequences: 5004
Number of extensions: 56547
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)