Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14e11
         (667 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4492|AAF56978.3| 3731|Drosophila melanogaster CG15523-P...    31   1.4  
AE014298-2363|AAF48588.1| 1061|Drosophila melanogaster CG13957-P...    29   5.7  
AF145664-1|AAD38639.1|  793|Drosophila melanogaster BcDNA.GH1111...    28   9.9  
AE013599-555|AAF59160.1|  793|Drosophila melanogaster CG2910-PB,...    28   9.9  
AE013599-554|AAM68878.1|  793|Drosophila melanogaster CG2910-PA,...    28   9.9  

>AE014297-4492|AAF56978.3| 3731|Drosophila melanogaster CG15523-PA
           protein.
          Length = 3731

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 24/80 (30%), Positives = 38/80 (47%)
 Frame = +2

Query: 278 ENKTIMNQSNNESTVESGLALPLALLTSMVDGNHSPPGRPYARLPTRAIKKLITKFQNII 457
           +  + +NQ    +TV   L   L L  S+V+G    P  P  RL  + I  L  K ++++
Sbjct: 598 DESSAINQHQLTTTVRQSLLPYLQLKISLVEGTMCGPVNP-VRL-VQLITHLEEKPRDVV 655

Query: 458 PLF*NTIHLNLECIA*TIMN 517
               N  H N++ +A  IMN
Sbjct: 656 NACYNCFHFNVKNLALMIMN 675


>AE014298-2363|AAF48588.1| 1061|Drosophila melanogaster CG13957-PA
           protein.
          Length = 1061

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 15/72 (20%), Positives = 35/72 (48%)
 Frame = +1

Query: 46  CEFFYNTTQSYYILCELWNRLFEVVACPAIVCNVHSIHIINVMSRVCDMALLSRQTSYSI 225
           C+ ++   +   IL  LW ++   V+ P  +  VH   + + MS + +  ++  + +   
Sbjct: 95  CQVYFLLNRMIVILQNLWRQIAASVSVPMDINEVHIFAVFDAMSELLEHIVVFNELANQ- 153

Query: 226 TTRISIVFTLMK 261
            ++IS ++ L K
Sbjct: 154 -SKISTMWALYK 164


>AF145664-1|AAD38639.1|  793|Drosophila melanogaster BcDNA.GH11110
           protein.
          Length = 793

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 575 KSVLRKPLYPKRTARDFRPRGHCIRTP 655
           K  + +P+Y   T  ++RPRGH +  P
Sbjct: 167 KMAIVEPVYKSTTRPEYRPRGHSMSPP 193


>AE013599-555|AAF59160.1|  793|Drosophila melanogaster CG2910-PB,
           isoform B protein.
          Length = 793

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 575 KSVLRKPLYPKRTARDFRPRGHCIRTP 655
           K  + +P+Y   T  ++RPRGH +  P
Sbjct: 167 KMAIVEPVYKSTTRPEYRPRGHSMSPP 193


>AE013599-554|AAM68878.1|  793|Drosophila melanogaster CG2910-PA,
           isoform A protein.
          Length = 793

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 575 KSVLRKPLYPKRTARDFRPRGHCIRTP 655
           K  + +P+Y   T  ++RPRGH +  P
Sbjct: 167 KMAIVEPVYKSTTRPEYRPRGHSMSPP 193


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,841,219
Number of Sequences: 53049
Number of extensions: 578811
Number of successful extensions: 1294
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2868730650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)