Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14e11
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z72507-13|CAH60789.1|  515|Caenorhabditis elegans Hypothetical p...    27   9.1  
Z72507-10|CAA96629.1|  531|Caenorhabditis elegans Hypothetical p...    27   9.1  

>AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.1 protein.
          Length = 675

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 94  LWNRLFEVVAC-PAIVCNVHSIHIINVMSRVCDMALLSRQTSYSITTRISIVFTLMKNIQ 270
           LWN  FE+    PA  CN    H++++MSR    +L S   +      ISI F   + ++
Sbjct: 76  LWNEHFEIDGSYPATWCNEKPFHLVDLMSR---KSLKSEIGAEMFNVEISIKFDKWEGLK 132

Query: 271 M 273
           +
Sbjct: 133 V 133


>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical protein
            T01H10.8 protein.
          Length = 2692

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -3

Query: 356  SAMPGAEPSRFLPLIHYLIDSXXXXXXXXXXXXINVNTIEIRVVME*EVCRDSNAMSHTR 177
            S+ PG    +FLPLI  ++ +             ++ TI + +  E   CR+ +A+   +
Sbjct: 1087 SSNPGPNLDKFLPLILQIV-AKIIRNDKGSDEVHDIVTITVEIFKE--WCREPHAVRTAQ 1143

Query: 176  LITLMMCM 153
            L+T MM M
Sbjct: 1144 LVTFMMDM 1151


>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical protein
            T01H10.8 protein.
          Length = 2692

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -3

Query: 356  SAMPGAEPSRFLPLIHYLIDSXXXXXXXXXXXXINVNTIEIRVVME*EVCRDSNAMSHTR 177
            S+ PG    +FLPLI  ++ +             ++ TI + +  E   CR+ +A+   +
Sbjct: 1087 SSNPGPNLDKFLPLILQIV-AKIIRNDKGSDEVHDIVTITVEIFKE--WCREPHAVRTAQ 1143

Query: 176  LITLMMCM 153
            L+T MM M
Sbjct: 1144 LVTFMMDM 1151


>Z72507-13|CAH60789.1|  515|Caenorhabditis elegans Hypothetical
           protein F17C11.7b protein.
          Length = 515

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 182 TRLITLMMCME*TLQTIAGHATTSNSLFHNSH 87
           TRL  L+ C E  + T+   +   NS++H+SH
Sbjct: 161 TRLRKLLACKENGISTLLHPSKLYNSVYHSSH 192


>Z72507-10|CAA96629.1|  531|Caenorhabditis elegans Hypothetical
           protein F17C11.7a protein.
          Length = 531

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 182 TRLITLMMCME*TLQTIAGHATTSNSLFHNSH 87
           TRL  L+ C E  + T+   +   NS++H+SH
Sbjct: 177 TRLRKLLACKENGISTLLHPSKLYNSVYHSSH 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,677,021
Number of Sequences: 27780
Number of extensions: 318459
Number of successful extensions: 623
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)