Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14e10
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 37 0.019
06_01_1179 + 10137652-10138038 32 0.53
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 30 2.8
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771 29 3.7
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 29 3.7
12_01_0373 + 2897874-2898911 29 6.5
02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465... 29 6.5
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 28 8.6
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 37.1 bits (82), Expect = 0.019
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Frame = -1
Query: 705 NDEVSVGSKTIVAAPAVVVNDVIESSTG-ASATEVINDEVSVGSKTIVAAPAVVVNDVIE 529
+ E SV ++ AA V V+E S AS+ E D+ +V K + +V + E
Sbjct: 484 SSEGSVTTEPTEAASTEFVTAVVEESAPTASSVETSEDDSTVDDKLVEPTASVSATEA-E 542
Query: 528 SSTGASATEVINDEVSVGSKTIVAAP--AVVVNDPIESSTGASATEVINDEALV 373
S +S V + E SV + +AP +V + P ++ ASA E+I D V
Sbjct: 543 SKEDSSEGSVASTE-SVTAVVEESAPVSSVAIEVPAPEASEASAQEIIEDSTTV 595
>06_01_1179 + 10137652-10138038
Length = 128
Score = 32.3 bits (70), Expect = 0.53
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = +2
Query: 371 LTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSS-LITSVALAPVEDSITSFT 547
+ A++ I++ A AP E + + AAT PT S+ A AP TS
Sbjct: 12 ILTAAAAISAAAQAPAESPSPKPSKSTAAATPAKAPTVASAPRKAGPAAAPTTTVATS-- 69
Query: 548 TTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGA 667
AG + + PT +++++ VA P + + F + AGA
Sbjct: 70 APAGGDEVSIPPTPFATVVSPVADGPADAADADF-SGAGA 108
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 29.9 bits (64), Expect = 2.8
Identities = 26/116 (22%), Positives = 44/116 (37%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T+ S TS + +P S + + + V PT + TS A +P S + + +
Sbjct: 1616 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1675
Query: 554 AGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAATIVLEPTDTSSLITSGS 721
+ PT S TS + +P S + + + + PT TS S
Sbjct: 1676 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1731
>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
Length = 372
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -1
Query: 675 IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEVI 496
+ A A + DV+ +G V+ND+ G ++ VVV + G A E+
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332
Query: 495 NDEV 484
++E+
Sbjct: 333 SEEI 336
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -1
Query: 570 IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVI 391
+ A A + DV+ +G V+ND+ G ++ VVV + G A E+
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332
Query: 390 NDE 382
++E
Sbjct: 333 SEE 335
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 29.5 bits (63), Expect = 3.7
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Frame = +2
Query: 398 SVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVED--SITSF-TTTAGAAT 568
S LA +D +GS TTA A+ + E T + + + S + V+D SI+ + AG+
Sbjct: 3066 SAQLADGDDLVGSKDTTAAHASGLKELT-SGNYVASSSSHVVQDVTSISKMESVQAGSEE 3124
Query: 569 IVLEPTDTSSLITSVALAPVEDS-ITSFTTTAGAATIVLEP-TDTSSLITSGST 724
I +D + I S + PV + IT + A A I ++P +T + +T+ T
Sbjct: 3125 IYHGYSDET--IHSARIKPVVGTEITENASVASAPVITIQPDIETEAGVTASLT 3176
>12_01_0373 + 2897874-2898911
Length = 345
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 389 LITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA 565
L+ ++A P S + TTT AAT T S+ TS + TS T A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTST----TSNGATSVTAAATAA 308
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 494 LITSVALAPVEDSITSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA 670
L+ ++A P S + TTT AAT T S+ TS + TS T A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTST----TSNGATSVTAAATAA 308
>02_01_0622 -
4658133-4658150,4658269-4658337,4658436-4658462,
4658808-4658873,4658954-4659076,4659562-4659629,
4659703-4659766,4659994-4660135,4660218-4660306,
4660574-4660637,4660870-4661021,4661124-4661261,
4661742-4661867,4661971-4662183,4662343-4662426,
4662583-4662742,4662993-4663126,4664047-4664136,
4664313-4664471,4665528-4665611,4666170-4666289,
4666338-4666391,4666899-4666945,4667556-4667598,
4667730-4668586,4668845-4668899
Length = 1081
Score = 28.7 bits (61), Expect = 6.5
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = -1
Query: 732 REQVLPEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEVINDEV-SVGSKTIVAAP 556
R +VLP++ ND V V +K ++ +V S ++ + SV S +AP
Sbjct: 91 RVEVLPKMTNDNVGVPNKVVLGCHLPDGQEVPSSPPEGDLEKLTAAPLPSVVSPLSPSAP 150
Query: 555 AVVVNDVIESSTGASATEVINDEVSVGSKTIVAAP 451
V + +S G S +N+ V SK +AAP
Sbjct: 151 NTAVALTVSTSHG-SVPSSLNEGHGVSSK--IAAP 182
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 279 YSNLVALRYLKLLVQPQPRLL*WFLL 356
Y+N AL+YL +PRLL W LL
Sbjct: 547 YTNHAALKYLLTKKDAKPRLLRWILL 572
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,035,854
Number of Sequences: 37544
Number of extensions: 311576
Number of successful extensions: 865
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -