Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14e09
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0403 - 13534954-13535462,13537895-13538050,13538545-13538644     29   2.7  
10_08_0972 + 21958658-21958825,21959006-21959197,21959645-219598...    29   4.8  
01_06_0328 + 28507942-28508610,28509669-28510826                       28   6.3  

>05_03_0403 - 13534954-13535462,13537895-13538050,13538545-13538644
          Length = 254

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 447 NPLRLTRGKKIFKRNGTEYWKINYILSFRXIEKLLKFYQLFTLHISIVIRKSFSK 611
           N    T  KKI K+   +   +N  L    + K  KF +LFTL   + +R+  SK
Sbjct: 15  NSCNKTWRKKISKKQSAQQGGVNQPLVVPQLFKFHKFMRLFTLQEMLFLRRRKSK 69


>10_08_0972 +
           21958658-21958825,21959006-21959197,21959645-21959845,
           21959920-21960009,21960424-21960591,21961100-21961354,
           21961506-21961789,21961878-21962040,21962156-21962502,
           21962726-21962759
          Length = 633

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 360 NGILELITRTFSHIPLLIDVINEEFF*TSNPLRLTRGKKIFK 485
           NG L   +R  S  PLLI     E+   S PL + RG+ +FK
Sbjct: 227 NGALVEKSRDDSEPPLLISCDGIEYPAVSRPLPIIRGRALFK 268


>01_06_0328 + 28507942-28508610,28509669-28510826
          Length = 608

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 468 GKKIFKRNGTEYWKINYI 521
           GK I + NGTE +K+NYI
Sbjct: 79  GKPILQLNGTEKYKVNYI 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,574,920
Number of Sequences: 37544
Number of extensions: 247221
Number of successful extensions: 428
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)