Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14e09
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039042-2|AAP40512.1|  366|Caenorhabditis elegans Serpentine re...    24   5.1  
AF067211-6|AAC16989.1|  308|Caenorhabditis elegans Serpentine re...    28   7.5  
AF067211-5|AAW88420.1|  329|Caenorhabditis elegans Serpentine re...    28   7.5  
U61947-5|AAB03134.1|  723|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AF039042-2|AAP40512.1|  366|Caenorhabditis elegans Serpentine
           receptor, class w protein102 protein.
          Length = 366

 Score = 24.2 bits (50), Expect(2) = 5.1
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = +2

Query: 428 RILLNFKSTAVNTWEKDIQKKWHGILENKLHIKFPLXRKAFEI-LPIIYLTYKYCDKKII 604
           RIL + K T +   +  +       L  KL +         E  L +IY+     DK ++
Sbjct: 239 RILQSIKITNLTRRKSSVHHDEKRDLSTKLIVVMTFTFVLIETPLGMIYMGRVIFDKNLM 298

Query: 605 F*TLSTTIVSYF*FVLRLCSISLH 676
              LST +  YF  ++ + SI LH
Sbjct: 299 ITLLSTDLAVYFLMLVTINSI-LH 321



 Score = 22.6 bits (46), Expect(2) = 5.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 236 ILM*VLINKF*RSLKFIIFVIFLTNVFKKVLI 331
           ++M VLI++F   + FII  I L  + + + I
Sbjct: 215 MIMDVLISRFIPCVAFIILTIALLRILQSIKI 246


>AF067211-6|AAC16989.1|  308|Caenorhabditis elegans Serpentine
           receptor, class z protein85, isoform a protein.
          Length = 308

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 501 YWKINYILSFRXIEKLLKFYQLFTLHISIVI 593
           YW   +ILSF  I+ ++ FYQ   + ++I++
Sbjct: 150 YWAHWFILSFEVIDVIIIFYQTAYMILNIIL 180


>AF067211-5|AAW88420.1|  329|Caenorhabditis elegans Serpentine
           receptor, class z protein85, isoform b protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 501 YWKINYILSFRXIEKLLKFYQLFTLHISIVI 593
           YW   +ILSF  I+ ++ FYQ   + ++I++
Sbjct: 171 YWAHWFILSFEVIDVIIIFYQTAYMILNIIL 201


>U61947-5|AAB03134.1|  723|Caenorhabditis elegans Hypothetical
           protein C06G3.4 protein.
          Length = 723

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = +2

Query: 440 NFKSTAVNTWEKDIQKKWHGILENKLHIKFPLXRKAFEILPIIYLTY 580
           NF      TWE + +KK +  +E   H+ + +  + F+ +  I + +
Sbjct: 187 NFNGNFWKTWESEGKKKLNETIEKMKHLNYLMGNQNFDDISSIAIVF 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,051,710
Number of Sequences: 27780
Number of extensions: 271747
Number of successful extensions: 558
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)