Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14e08
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-12|CAA92517.2|   86|Caenorhabditis elegans Hypothetical p...    90   1e-18
Z92826-7|CAD90171.2|   99|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical ...    28   7.3  
U41531-5|AAA83159.3|  432|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z68227-12|CAA92517.2|   86|Caenorhabditis elegans Hypothetical
           protein F49C12.13 protein.
          Length = 86

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 37/76 (48%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
 Frame = -1

Query: 696 SILXGVVGIICPIFAPKGPNRGIIQVVLILTAATCWLFWLCAYMAQMNPLIGPRLSNETL 517
           S    ++G   P   PKGPNRGIIQ+++I+TA  CW+FW+  ++ Q+NPLIGP+++ +T+
Sbjct: 11  SAFWAIIGFGGPWIVPKGPNRGIIQLMIIMTAVCCWMFWIMVFLHQLNPLIGPQINVKTI 70

Query: 516 IWISRTWG---NKINN 478
            WIS  WG   N INN
Sbjct: 71  RWISEKWGDAPNVINN 86


>Z92826-7|CAD90171.2|   99|Caenorhabditis elegans Hypothetical
           protein C18D11.6 protein.
          Length = 99

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 486 FCFPKCVKSRLGFHC*VWAR*EGSSVP 566
           FC P  +K ++G H   W + E S  P
Sbjct: 23  FCAPATLKEKVGDHALTWTKVEASQTP 49


>AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical
           protein ZK973.2 protein.
          Length = 865

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 369 LNLNPKT*CNILLCRILVYLYSSKMNKV 286
           L+++P   C+ + C+++VY  S K N V
Sbjct: 790 LDIDPTAPCSFMTCQLIVYKTSEKKNPV 817


>U41531-5|AAA83159.3|  432|Caenorhabditis elegans Hypothetical
           protein T07D1.2 protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -1

Query: 489 KINNTQA*SSDLK-SPCRGLVGWFKNVTMIVKSY**MQMQ-FLNLN 358
           K+N  +A + +++ + C  L+ W KN+ M+  S   M+ + FLN N
Sbjct: 28  KVNAIRACAGEIRFNACEYLINWSKNLEMVENSLINMRTKLFLNYN 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,705,610
Number of Sequences: 27780
Number of extensions: 323807
Number of successful extensions: 593
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)