Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14e07
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 353 2e-98
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 67 3e-12
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 53 3e-08
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 32 0.067
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 30 0.27
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 29 0.83
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 4.4
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 25 7.7
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 25 7.7
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 353 bits (867), Expect = 2e-98
Identities = 171/214 (79%), Positives = 192/214 (89%)
Frame = -2
Query: 682 TQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPA 503
TQAGSEVSALLGRIPSAVGYQPTLATDMG MQERITTTKKGSITSVQA+YVPADDLTDPA
Sbjct: 308 TQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITTTKKGSITSVQAVYVPADDLTDPA 367
Query: 502 PATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDY 323
PATTFAHLDATTVLSR+I+ELGIYPAVDPLDS SR+MDP I+G EHYN+A VQ++LQ+Y
Sbjct: 368 PATTFAHLDATTVLSRSISELGIYPAVDPLDSKSRMMDPRILGEEHYNLAGSVQQMLQEY 427
Query: 322 KSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGF 143
KSLQDIIAILGMDELSE DKLTV RARK+QRFLSQPF VAEVFTG G+LV L++TI+ F
Sbjct: 428 KSLQDIIAILGMDELSEADKLTVERARKVQRFLSQPFAVAEVFTGIEGRLVSLKDTIRSF 487
Query: 142 SKILAGDYDHLPEVAFYMVGPIEEVVAKADTLAK 41
+IL G +D LPE AFYMVG I++ V KA+ +A+
Sbjct: 488 KEILEGKHDSLPESAFYMVGSIDDAVKKAEKIAQ 521
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 66.9 bits (156), Expect = 3e-12
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 7/157 (4%)
Frame = -2
Query: 667 EVSALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPAT 494
EVSA +P GY + TD+ T+ ER + GSIT + + +P DD+T P P
Sbjct: 287 EVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDL 346
Query: 493 TFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQD 326
T + + R + IYP ++ L S SR+M I +H +V+ + +
Sbjct: 347 TGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKSAIGEGMTRNDHGDVSNQLYAMYAI 406
Query: 325 YKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 218
+ + +++G + LS+ED+L + K ++ F+SQ
Sbjct: 407 GRDAASMKSVVGEEALSQEDRLALEFLGKFEKTFISQ 443
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 53.2 bits (122), Expect = 3e-08
Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Frame = -2
Query: 679 QAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI-------TTTKKGSITSVQAIYVPAD 521
+A E+S L +P+ GY L + + ER + ++G+++ V A+ P
Sbjct: 364 EALREISGRLAEMPADSGYPAYLGAKLASFYERAGRARCLGSPDREGTVSIVGAVSPPGG 423
Query: 520 DLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEH----YNVA 353
D +DP + T + L + +A+ +P+++ S S+ ++ E +N
Sbjct: 424 DFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINTSLSYSKYINALQPWYEERVPGFNTL 483
Query: 352 RG-VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 218
R +++I+Q S+ +II ++G LSE DK+T+ A I+ FL Q
Sbjct: 484 RDQIKQIIQQEDSMLEIIQLVGKSALSETDKVTLDIAGIIKNDFLQQ 530
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 32.3 bits (70), Expect = 0.067
Identities = 29/116 (25%), Positives = 48/116 (41%)
Frame = -2
Query: 562 GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPN 383
GS+T++ I D++ P + D L + GI PA++ S SR+
Sbjct: 347 GSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAINVGLSVSRVGSAA 406
Query: 382 IIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQP 215
+ A VA ++ L Y+ + A G D L + T+ R ++ L QP
Sbjct: 407 QVKAMK-QVAGQIKLFLAQYREVAS-FAQFGSD-LDAGTRATLDRGLRLTELLKQP 459
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 30.3 bits (65), Expect = 0.27
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -2
Query: 547 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA--VDPLDSTSRIMDPNIIG 374
+ I VP D P F + SR +A G P+ V+P +S ++I+D I
Sbjct: 91 IAIIGVPFDTAVSHRPGARFGPKGIRSASSRQMAIRGFNPSLNVNPYESWAKILDCGDIP 150
Query: 373 AEHYNVARGVQKILQDYKSL 314
Y+ V+++ + Y L
Sbjct: 151 VSSYDNQLAVRQMTEGYIDL 170
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 0.83
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = -2
Query: 589 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 467
QE + +G+ T ++A+++P+ + P P+ + A +
Sbjct: 78 QEAVVLPSQGNFTQLEALFIPSKSIKAPTPSRLLREIAAVS 118
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 571 TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 434
TK G++ + V + DPA A +L+ +V RA A LG+
Sbjct: 439 TKAGALLGIGVTNVAVRNEADPAMAILSEYLETGSVKLRASAILGL 484
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/54 (18%), Positives = 28/54 (51%)
Frame = +2
Query: 479 QVSKSGSWSRICQVISWYINSLYRCDGTFLGGGNSFLHSTHVSSQSRLISYSRW 640
++S++ S+ ++++ Y+ + D F+G SF+ +T +++ + W
Sbjct: 302 RISRADSYDHDIRMLAKYLQEVTLMDEIFIGAHISFIAATAYYLSMQMLGHLDW 355
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 162 SSGTSLPACPVNTSATWKGCERNL*ILRARATVNLSSSDNSS 287
S G P+ S CE N +R R T ++ SSD S+
Sbjct: 130 SGGIQYSNVPLINSRVTPNCESNCSNIRRRLTAHIISSDAST 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,919,613
Number of Sequences: 5004
Number of extensions: 63553
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -