Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14e07
(683 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 384 e-107
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 64 9e-11
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 64 1e-10
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 62 5e-10
Z82288-5|CAB05324.1| 380|Caenorhabditis elegans Hypothetical pr... 29 2.3
AF098994-4|AAO21390.1| 606|Caenorhabditis elegans Hypothetical ... 29 2.3
Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical pr... 29 3.1
U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical pr... 29 4.1
U23513-1|ABD94110.1| 294|Caenorhabditis elegans Hypothetical pr... 29 4.1
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 28 7.1
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 28 7.1
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z50797-5|CAA90675.1| 342|Caenorhabditis elegans Hypothetical pr... 27 9.4
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 27 9.4
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 27 9.4
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 27 9.4
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 384 bits (946), Expect = e-107
Identities = 187/214 (87%), Positives = 199/214 (92%)
Frame = -2
Query: 682 TQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPA 503
TQAGSEVSALLGRIPSAVGYQPTLATDMG+MQERITTTKKGSITSVQAIYVPADDLTDPA
Sbjct: 321 TQAGSEVSALLGRIPSAVGYQPTLATDMGSMQERITTTKKGSITSVQAIYVPADDLTDPA 380
Query: 502 PATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDY 323
PATTFAHLDATTVLSR IAEL IYPAVDPLDSTSRIMDPN++G HY++ARGVQKILQDY
Sbjct: 381 PATTFAHLDATTVLSRGIAELAIYPAVDPLDSTSRIMDPNVVGQNHYDIARGVQKILQDY 440
Query: 322 KSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGF 143
KSLQDIIAILGMDELSEEDKLTV+RARKIQRFLSQPFQVAEVFTGH GK V LEETI+GF
Sbjct: 441 KSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHQGKFVSLEETIRGF 500
Query: 142 SKILAGDYDHLPEVAFYMVGPIEEVVAKADTLAK 41
+ IL G+ DHLPEVAFYM G I++V KA+ LAK
Sbjct: 501 TMILKGELDHLPEVAFYMQGGIDDVFKKAEELAK 534
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 64.1 bits (149), Expect = 9e-11
Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 7/161 (4%)
Frame = -2
Query: 679 QAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK--KGSITSVQAIYVPADDLTDP 506
+A E+SA +P G+ + TD+ T+ ER K +GSIT + + +P +D+T P
Sbjct: 297 EALREISAAREEVPGRRGFPGYMYTDLATIYERAGRVKGREGSITQIPILTMPNNDITHP 356
Query: 505 APATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM----DPNIIGAEHYNVARGVQK 338
P T + + + + + IYP +D L S SR+M + +H +++ +
Sbjct: 357 IPDLTGYITEGQIYIDKQLHKRLIYPPIDVLPSLSRLMKSAVGEGMTREDHSDLSNQLYA 416
Query: 337 ILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 218
K +Q + A++G++ LS +D L + K ++ F++Q
Sbjct: 417 CYAMGKDVQAMKAVVGVEALSPDDLLYLEFLAKFEKNFIAQ 457
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 63.7 bits (148), Expect = 1e-10
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 7/161 (4%)
Frame = -2
Query: 679 QAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDP 506
+A EVSA +P G+ + TD+ T+ ER + GSIT + + +P DD+T P
Sbjct: 285 EALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRDGSITQIPILTMPNDDITHP 344
Query: 505 APATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQK 338
P T + + R + IYP ++ L S SR+M I +H +V+ +
Sbjct: 345 IPDLTGYITEGQIYVDRQLHNRLIYPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYA 404
Query: 337 ILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 218
K +Q + A++G + LS +D L + K ++ F++Q
Sbjct: 405 CYAIGKDVQAMKAVVGEEALSSDDLLYLEFLTKFEKNFITQ 445
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 61.7 bits (143), Expect = 5e-10
Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 14/202 (6%)
Frame = -2
Query: 679 QAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-------KGSITSVQAIYVPAD 521
+A E+S LG +P+ GY LA + + ER K +GS+T V A+ P
Sbjct: 345 EALREISGRLGEMPADSGYPAYLAARLASFYERAGRVKCLGSPEREGSVTIVGAVSPPGG 404
Query: 520 DLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM-------DPNIIGAEHY 362
D DP + T + L + +A+ +P+++ L S S M + N E
Sbjct: 405 DFADPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSEYMRALEEFYEKNY--PEFV 462
Query: 361 NVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHA 182
++ ++ILQ+ + L +I+ ++G L+E DK+T+ ++ + + F +T +
Sbjct: 463 SLRTKCKEILQEEEDLSEIVQLVGKASLAESDKVTL----EVAKIIKDDFLQQNGYTKY- 517
Query: 181 GKLVPLEETIKGFSKILAGDYD 116
+ P +T+ G K + G YD
Sbjct: 518 DRFCPFYKTV-GMLKNMIGFYD 538
>Z82288-5|CAB05324.1| 380|Caenorhabditis elegans Hypothetical
protein ZK896.7 protein.
Length = 380
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = -2
Query: 625 YQPTLATDMG--TMQERITTTKKGSITSVQ-AIYVPADDLTDPAPATTFAHLDATTV 464
Y PT T T+ TTT+ + T+V+ A +T P P TT + TTV
Sbjct: 146 YDPTATTSAAPTTIPPTTTTTRAPTTTTVRKTTQTTATTMTTPKPTTTVSTTTTTTV 202
>AF098994-4|AAO21390.1| 606|Caenorhabditis elegans Hypothetical
protein T06A4.1b protein.
Length = 606
Score = 29.5 bits (63), Expect = 2.3
Identities = 26/112 (23%), Positives = 45/112 (40%)
Frame = -2
Query: 607 TDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYP 428
T+ T +E TTT + T+ P + T+P+P T A +TT + +E
Sbjct: 482 TEAPTTEEPTTTTTEEPTTTTTT-EEPTEAPTEPSPTTVEATEASTTPEASTSSETSTTE 540
Query: 427 AVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSE 272
+P TS + P E + DY L ++ + D++S+
Sbjct: 541 NSEPNQKTSTPVAPEASTVEEETITPIKCVDYGDYCRLWGVLQLCYRDQVSK 592
>Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical
protein W04G5.9 protein.
Length = 405
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = -2
Query: 616 TLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELG 437
T+AT + TTTK + T++ + T P P TT + TT +R IA
Sbjct: 173 TVATTKTSPSTLRTTTKPPTTTTIATTRITTKTTTSPPPFTT--TVTTTTSAARTIATTT 230
Query: 436 IYPAVDPLDSTSRIMDP 386
V P+ + + P
Sbjct: 231 PIKTVPPVKVFGKAIKP 247
>U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical
protein F25E2.2 protein.
Length = 624
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/60 (30%), Positives = 23/60 (38%)
Frame = -2
Query: 619 PTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAEL 440
PT T T + TTT + + P T PAP TT TT+ + A L
Sbjct: 419 PTTTTTTTTTPKPTTTTTTTTTPAPTTTQKPTTTTTTPAPTTTSTTSIPTTIATTTAAPL 478
>U23513-1|ABD94110.1| 294|Caenorhabditis elegans Hypothetical
protein D2021.4a protein.
Length = 294
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = -2
Query: 403 SRIMDPNIIGAEHYN-VARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRF 227
++I D N+I + HYN V+ G + L D K ++ + + D E K+ +A + +F
Sbjct: 56 NKIKDENVIFSMHYNFVSAGDPRKLIDIK-IEKVGNVYTADVYHENKKIGLAHIKTDSKF 114
Query: 226 LSQ-PF 212
L + PF
Sbjct: 115 LRKIPF 120
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 533 INSL-YRCDGTFLGGGNSFLHSTHVSSQSRLISYS 634
INSL + GTFLG G + HV S S ++S S
Sbjct: 426 INSLSFDMTGTFLGIGGQKVQVLHVKSWSEVVSLS 460
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/80 (27%), Positives = 39/80 (48%)
Frame = -2
Query: 664 VSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFA 485
VS+ ++P QPT+++++G + + T K+ +I V+ P+ P T
Sbjct: 1332 VSSFAPKVPETKINQPTISSNIGDLSK---TEKESTIPRVEV--TPS---ASPESTTVTE 1383
Query: 484 HLDATTVLSRAIAELGIYPA 425
H+DA T S I +G P+
Sbjct: 1384 HIDAET-NSATIPTIGTPPS 1402
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
protein C34F6.1 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 341 ENSSGLQIPAGHYCYFG 291
ENS+G + AGH+C+ G
Sbjct: 424 ENSNGTECSAGHWCHIG 440
>Z50797-5|CAA90675.1| 342|Caenorhabditis elegans Hypothetical
protein T22H6.4 protein.
Length = 342
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 481 LDATTVLSRAIAELGIYPAVDPLDSTSRIMD 389
+D ++ A LGIYPA+DP+ + I D
Sbjct: 275 IDVGVAANKTAAFLGIYPALDPMIAIFLIKD 305
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 27.5 bits (58), Expect = 9.4
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Frame = -2
Query: 667 EVSALLGRIPSAVGYQPTLATDMGTMQERITTTKK----GSITSVQAIYVPADDLTDPAP 500
++S LL R P Y + + ER GS+T++ I A D++ P
Sbjct: 281 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNNSLGGGSLTALPVIETQAGDVSAYIP 340
Query: 499 ATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 395
+ D L + G+ PA++ S SR+
Sbjct: 341 TNVISITDGQIFLETELFYKGVRPAINVGLSVSRV 375
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 27.5 bits (58), Expect = 9.4
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Frame = -2
Query: 667 EVSALLGRIPSAVGYQPTLATDMGTMQERITTTKK----GSITSVQAIYVPADDLTDPAP 500
++S LL R P Y + + ER GS+T++ I A D++ P
Sbjct: 273 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNNSLGGGSLTALPVIETQAGDVSAYIP 332
Query: 499 ATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 395
+ D L + G+ PA++ S SR+
Sbjct: 333 TNVISITDGQIFLETELFYKGVRPAINVGLSVSRV 367
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 27.5 bits (58), Expect = 9.4
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Frame = -2
Query: 667 EVSALLGRIPSAVGYQPTLATDMGTMQERITTTKK----GSITSVQAIYVPADDLTDPAP 500
++S LL R P Y + + ER GS+T++ I A D++ P
Sbjct: 308 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNNSLGGGSLTALPVIETQAGDVSAYIP 367
Query: 499 ATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 395
+ D L + G+ PA++ S SR+
Sbjct: 368 TNVISITDGQIFLETELFYKGVRPAINVGLSVSRV 402
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,134,641
Number of Sequences: 27780
Number of extensions: 360342
Number of successful extensions: 987
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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