Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14e06
(496 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein... 208 5e-55
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos... 208 5e-55
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi... 27 1.6
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 26 2.7
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 3.6
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 4.7
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 25 4.7
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.3
>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 152
Score = 208 bits (507), Expect = 5e-55
Identities = 95/127 (74%), Positives = 111/127 (87%)
Frame = -3
Query: 443 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 264
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 263 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 84
EE+E+I+TI+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61 TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120
Query: 83 RGMRHXL 63
RG+RH L
Sbjct: 121 RGLRHAL 127
Score = 31.5 bits (68), Expect = 0.072
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2
Query: 48 RGQHTKTTGRRGR 10
RGQHTKTTGRRG+
Sbjct: 132 RGQHTKTTGRRGK 144
>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 152
Score = 208 bits (507), Expect = 5e-55
Identities = 95/127 (74%), Positives = 111/127 (87%)
Frame = -3
Query: 443 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 264
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 263 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 84
EE+E+I+TI+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61 TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120
Query: 83 RGMRHXL 63
RG+RH L
Sbjct: 121 RGLRHAL 127
Score = 31.5 bits (68), Expect = 0.072
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2
Query: 48 RGQHTKTTGRRGR 10
RGQHTKTTGRRG+
Sbjct: 132 RGQHTKTTGRRGK 144
>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 151
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 116 DLERLKKIRAHRGMRHXLG 60
D+ RL IR +RGMRH G
Sbjct: 76 DISRLVNIRCYRGMRHVNG 94
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 2.7
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 231 HDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANT 341
+++D F+ F C F+ + G + NN G+ P ++
Sbjct: 336 YENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDS 372
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 113 NLHGVLNPSWRRSAGCIYHQQYPFAYLGTSLVSY 214
N H ++PS R S+ +Y P Y ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 4.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 380 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 288
GK+KV+ I + R+YSN+ +KA+ L
Sbjct: 10 GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 4.7
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = -3
Query: 290 LDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDL 111
L+ A TEE II+ N QY IP+ F+ +K+ + + +S +SK D
Sbjct: 105 LESNATAFTEELWSLIISASQN--QYGIPEKFILEKKEEISKLKDRTEASKEESKTVTDH 162
Query: 110 ERLKKIR 90
++ R
Sbjct: 163 SNRRESR 169
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 214 YCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLR 333
YC F + + + V+SP ++ M+ F+R +L YL+
Sbjct: 58 YCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWILIYLK 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,495
Number of Sequences: 5004
Number of extensions: 43493
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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