Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14e06
(496 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 192 1e-49
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 182 2e-46
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 180 6e-46
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 65 3e-11
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 31 0.38
03_01_0404 + 3138624-3140096 31 0.51
10_08_1025 - 22391267-22391767,22392641-22392736,22392838-223931... 29 2.1
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 3.6
05_04_0278 - 19694590-19694757,19696331-19696391,19696503-196966... 28 3.6
03_01_0646 + 4742398-4742994,4743681-4744085 27 6.3
04_04_0883 + 29079315-29079715,29080918-29081038,29081127-290812... 27 8.3
03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084 27 8.3
03_01_0414 + 3183292-3183735,3184547-3184969,3185435-3185535,318... 27 8.3
02_05_1211 + 34956601-34956850,34956950-34957102,34957562-349576... 27 8.3
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 192 bits (469), Expect = 1e-49
Identities = 81/122 (66%), Positives = 109/122 (89%)
Frame = -3
Query: 425 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 246
+ FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T EE+E+
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 245 IITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHX 66
++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RH
Sbjct: 63 LMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 122
Query: 65 LG 60
G
Sbjct: 123 WG 124
Score = 31.5 bits (68), Expect = 0.38
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2
Query: 48 RGQHTKTTGRRGR 10
RGQHTKTTGRRG+
Sbjct: 128 RGQHTKTTGRRGK 140
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 182 bits (442), Expect = 2e-46
Identities = 85/144 (59%), Positives = 113/144 (78%), Gaps = 16/144 (11%)
Frame = -3
Query: 443 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 279
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60
Query: 278 -----------AGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLD 132
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD
Sbjct: 61 YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALD 120
Query: 131 SKLREDLERLKKIRAHRGMRHXLG 60
KLR+DLERLKKIR HRG+RH G
Sbjct: 121 MKLRDDLERLKKIRNHRGLRHYWG 144
Score = 31.5 bits (68), Expect = 0.38
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2
Query: 48 RGQHTKTTGRRGR 10
RGQHTKTTGRRG+
Sbjct: 148 RGQHTKTTGRRGK 160
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 180 bits (438), Expect = 6e-46
Identities = 85/146 (58%), Positives = 113/146 (77%), Gaps = 18/146 (12%)
Frame = -3
Query: 443 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 279
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60
Query: 278 -------------AGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSN 138
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+
Sbjct: 61 PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNA 120
Query: 137 LDSKLREDLERLKKIRAHRGMRHXLG 60
LD KLR+DLERLKKIR HRG+RH G
Sbjct: 121 LDMKLRDDLERLKKIRNHRGLRHYWG 146
Score = 31.5 bits (68), Expect = 0.38
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2
Query: 48 RGQHTKTTGRRGR 10
RGQHTKTTGRRG+
Sbjct: 150 RGQHTKTTGRRGK 162
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 64.9 bits (151), Expect = 3e-11
Identities = 30/48 (62%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Frame = -3
Query: 200 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHXLG 60
W L R+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RH G
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWG 54
Score = 31.5 bits (68), Expect = 0.38
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2
Query: 48 RGQHTKTTGRRGR 10
RGQHTKTTGRRG+
Sbjct: 58 RGQHTKTTGRRGK 70
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 31.5 bits (68), Expect = 0.38
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -3
Query: 122 REDLERLKKIRAHRGMRHXLG 60
R +ERLK+IR +RG+RH LG
Sbjct: 108 RVAIERLKEIRCYRGIRHKLG 128
>03_01_0404 + 3138624-3140096
Length = 490
Score = 31.1 bits (67), Expect = 0.51
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -3
Query: 170 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 72
+G Y QL++ LDS ++D R++K+ RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435
>10_08_1025 -
22391267-22391767,22392641-22392736,22392838-22393106,
22393257-22393431,22393503-22393718,22393819-22393926,
22394020-22394544,22394631-22394819,22394924-22395041,
22395172-22395437,22395521-22395658
Length = 866
Score = 29.1 bits (62), Expect = 2.1
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -3
Query: 224 PRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKK--IRAHRGMRHXLGPSC 51
PRQ K WF NR+ + K Q + N+ LR + E LK R +R+ + P+C
Sbjct: 159 PRQVKF--WFQNRRTQM---KAQQDRADNVI--LRAENENLKSDNFRLQAAIRNVVCPNC 211
Query: 50 GVVSTLRLLAGEEE 9
G + L ++ EE+
Sbjct: 212 GHAAVLADMSYEEQ 225
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 298 SAFLRTMLEYLRPTPLIAVIANITL 372
S+FL TM EY+R P A +AN T+
Sbjct: 255 SSFLGTMEEYIREAPRTAPVANKTV 279
>05_04_0278 -
19694590-19694757,19696331-19696391,19696503-19696658,
19696740-19696912,19698199-19698276,19698399-19698575,
19698924-19699001,19700573-19700692,19700803-19701183
Length = 463
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -3
Query: 167 GKYSQLTSSNLDSKLREDLERLKKIRA--HRGMRHXLGPSCGVVSTLRLLAGEE 12
G SQ+ + L++ D+ + +IR+ +R +G S V+ST RLL+G E
Sbjct: 22 GSNSQVNNEFLNT--HNDIFHMTQIRSGPSESLRKSIGTSKDVISTTRLLSGRE 73
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 360 CDDGYQRCWPEVLQHCSQKSR 298
CDD Y+R W +L+ ++SR
Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316
>04_04_0883 +
29079315-29079715,29080918-29081038,29081127-29081246,
29081646-29081876,29081951-29082517
Length = 479
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 269 CTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGK-YSQLTSSNL 135
C EE ++ M P + + DW +N D+V+ + Y+++ + N+
Sbjct: 236 CNTEEDCALLASMLPPVEAALLDWAINLMADVVEHENYNKMNARNI 281
>03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084
Length = 156
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 190 FRNQSGILYCLGFDMIVIIFSTSSSVHSPARLS 288
F N YCLG +I ++++T+ RLS
Sbjct: 40 FDNYPEYTYCLGISIIAVLYTTAQVTRDVHRLS 72
>03_01_0414 +
3183292-3183735,3184547-3184969,3185435-3185535,
3186178-3187439,3187625-3187665,3187777-3187845,
3187975-3188075,3188413-3188491,3188570-3188668,
3188757-3188825,3188918-3188967,3189211-3189387,
3189496-3189634
Length = 1017
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -3
Query: 482 VLCLGTLVR--NLTKMSLVIP-DKFQHILRIMNTNIDGKRKVMFAMTAIKGV 336
VL +G + R NL+ +S +P IL N ID KR++ A+ KG+
Sbjct: 793 VLFMGAVTRPPNLSIVSEYLPRGSLYKILHRPNCQIDEKRRIKMALDVAKGM 844
>02_05_1211 +
34956601-34956850,34956950-34957102,34957562-34957674,
34958092-34958198,34958289-34958404,34958502-34958577,
34958652-34958693,34958809-34958917,34959102-34959199,
34959297-34959390,34959517-34959642
Length = 427
Score = 27.1 bits (57), Expect = 8.3
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = -3
Query: 302 ADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDS-- 129
+ +DLD R+G T V K T+ NP + ++ + + KD Y +LT+ N ++
Sbjct: 190 SSVDLDIRSGSNTRHVVLKRQTVTLNPVRSRMCE--IPGAKDNSKVGYIKLTTFNQNAAG 247
Query: 128 KLREDLERLKK 96
++E L++L++
Sbjct: 248 SVKEALQKLRE 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,984,661
Number of Sequences: 37544
Number of extensions: 281571
Number of successful extensions: 766
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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