Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14e06
(496 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical p... 198 1e-51
AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical ... 28 4.3
Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical pr... 27 7.5
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr... 27 7.5
AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical ... 27 7.5
AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical ... 27 7.5
AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or cys... 27 9.9
AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protei... 27 9.9
>Z99281-11|CAB16517.1| 154|Caenorhabditis elegans Hypothetical
protein Y57G11C.16 protein.
Length = 154
Score = 198 bits (484), Expect = 1e-51
Identities = 89/128 (69%), Positives = 110/128 (85%)
Frame = -3
Query: 443 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 264
MSL+IP+KFQHI R+MNTNIDG RKV +A+TAIKGVGRR++ + +KAD+D++KRAGE T
Sbjct: 1 MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60
Query: 263 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 84
EE+ +KI+TIM NP QYKIP+WFLNRQKDI DGK QL S+ +D+KLREDLER+KKIR H
Sbjct: 61 EEDFDKIVTIMQNPSQYKIPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLH 120
Query: 83 RGMRHXLG 60
RG+RH G
Sbjct: 121 RGLRHYWG 128
Score = 31.5 bits (68), Expect = 0.35
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2
Query: 48 RGQHTKTTGRRGR 10
RGQHTKTTGR+GR
Sbjct: 132 RGQHTKTTGRKGR 144
>AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical
protein M01B12.4b protein.
Length = 644
Score = 27.9 bits (59), Expect = 4.3
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Frame = -3
Query: 314 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 135
VLK+ I L KR + E+E K +T+ K G + T + L
Sbjct: 45 VLKREQIALQKRMQQLNEDEERKKVTLAKQHEVSSRIAAITKSPKSFAFGSSTPRTLAYL 104
Query: 134 DSKLREDLERLKKIR-AHRGMRHXLGPSCGVVSTLRL 27
D+ + + + KK+R +G P+ S L L
Sbjct: 105 DNLPKSEQQYDKKLRPLDQGPSQTTSPTSTTESCLNL 141
>Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical
protein ZK829.4 protein.
Length = 536
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -3
Query: 227 NPRQYKIPDWFLNRQKDIVDGKYS-QLTSSNLDSKLREDL 111
NP YK+ D++ N+ +++ K + +L S++L K +++L
Sbjct: 40 NPSFYKMVDFYFNKGAEVIAPKLAEELKSNSLSQKDKKNL 79
>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
C13F10.4 protein.
Length = 2076
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 360 CDDGYQRCWPEVLQHCS 310
C + YQ CWP +L CS
Sbjct: 1512 CREYYQICWPPILLACS 1528
>AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical
protein M01B12.4c protein.
Length = 678
Score = 27.1 bits (57), Expect = 7.5
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Frame = -3
Query: 314 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 135
VLK+ I L KR + E+E K +T+ K G + T + L
Sbjct: 45 VLKREQIALQKRMQQLNEDEERKKVTLAKQHEVSSRIAAITKSPKSFAFGSSTPRTLAYL 104
Query: 134 DSKLREDLERLKKIR-AHRGMRHXLGPSCGVVSTLRL 27
D+ + + + KK+R +G P+ +T ++
Sbjct: 105 DNLPKSEQQYDKKLRPLDQGPSQTTSPTSTTSNTTKM 141
>AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical
protein M01B12.4a protein.
Length = 634
Score = 27.1 bits (57), Expect = 7.5
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Frame = -3
Query: 314 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 135
VLK+ I L KR + E+E K +T+ K G + T + L
Sbjct: 45 VLKREQIALQKRMQQLNEDEERKKVTLAKQHEVSSRIAAITKSPKSFAFGSSTPRTLAYL 104
Query: 134 DSKLREDLERLKKIR-AHRGMRHXLGPSCGVVSTLRL 27
D+ + + + KK+R +G P+ +T ++
Sbjct: 105 DNLPKSEQQYDKKLRPLDQGPSQTTSPTSTTSNTTKM 141
>AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 362
Score = 26.6 bits (56), Expect = 9.9
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = -3
Query: 443 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 264
+ L P Q I +NT +GK K + +IK N + KAD D DK G
Sbjct: 116 LDLTTPAAVQEINSFVNTATNGKIKNIATQDSIKDAIALLINSIYFKADWD-DKFDGMSV 174
Query: 263 EEE 255
E+
Sbjct: 175 SEQ 177
>AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protein 3
protein.
Length = 362
Score = 26.6 bits (56), Expect = 9.9
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = -3
Query: 443 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 264
+ L P Q I +NT +GK K + +IK N + KAD D DK G
Sbjct: 116 LDLTTPAAVQEINSFVNTATNGKIKNIATQDSIKDAIALLINSIYFKADWD-DKFDGMSV 174
Query: 263 EEE 255
E+
Sbjct: 175 SEQ 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,731,826
Number of Sequences: 27780
Number of extensions: 245402
Number of successful extensions: 750
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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