Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14d24
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 56 2e-08
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 56 2e-08
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 55 4e-08
U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical pr... 29 1.8
U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily as... 29 1.8
AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical ... 29 2.4
AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical ... 29 2.4
AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical ... 29 2.4
AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical ... 28 4.2
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 28 5.6
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 5.6
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 28 5.6
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 28 5.6
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 28 5.6
AL021475-1|CAA16312.1| 758|Caenorhabditis elegans Hypothetical ... 27 7.4
Z77131-1|CAB00854.1| 91|Caenorhabditis elegans Hypothetical pr... 27 9.8
U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL032621-2|CAA21491.2| 147|Caenorhabditis elegans Hypothetical ... 27 9.8
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 55.6 bits (128), Expect = 2e-08
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Frame = -1
Query: 581 LNQVCGSDNHTYDNACLLNCATA-TNPGLSILYSGLCA-------DEVK------IVDGP 444
+ VC ++ T+DN C + + T + + + G C D K +VDG
Sbjct: 401 MRPVCATNGETFDNECEMKKKSCETKSMIKVKHQGTCGIGVCATFDSCKKPQVCVVVDGK 460
Query: 443 SKYPSCTCTREMKPVCGSDGITYNNDC-LLNCATINDSRLGIEYYGPC 303
K +CT E K VCGSDG TY+N+C L N A + + ++Y C
Sbjct: 461 PKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSAC 508
Score = 47.6 bits (108), Expect = 6e-06
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 20/114 (17%)
Frame = -1
Query: 584 DLNQVCGSDNHTYDNACLL-NCATATNPGLSILYSGLC-ADEVK---------IVDGPSK 438
+ +VCGSD TY N C L N A + + Y+ C A ++K V G ++
Sbjct: 471 EFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACEACKLKKEKCDFYSACVVGENE 530
Query: 437 YPSCTCT--------REMKPVCGSDGITYNNDCLLNCATINDSRLGI-EYYGPC 303
C C E K VCG+DG+TY+++C + + + S+ + + G C
Sbjct: 531 KAECKCPDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKC 584
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = -1
Query: 434 PSCTCTREMKPVCGSDGITYNNDCLLNCATINDSR 330
P+C + P+CGSDGI YNN C LN + D R
Sbjct: 684 PTCNLSSNY-PICGSDGIVYNNQCHLNTISCRDQR 717
Score = 37.5 bits (83), Expect = 0.007
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 20/110 (18%)
Frame = -1
Query: 572 VCGSDNHTYDNACLLNCATATNPGLSILYSGLCADEV-------------KIVDGPSKYP 432
VCG+D TY N C L A +++ DE V P +
Sbjct: 330 VCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSPCEKMECGFWGSCVVKPDRTA 389
Query: 431 SCTCTRE----MKPVCGSDGITYNNDCLL---NCATINDSRLGIEYYGPC 303
C C M+PVC ++G T++N+C + +C T S + +++ G C
Sbjct: 390 ECECPNRCEDVMRPVCATNGETFDNECEMKKKSCET--KSMIKVKHQGTC 437
Score = 36.7 bits (81), Expect = 0.012
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Frame = -1
Query: 572 VCGSDNHTYDNACLLN---CATATNPGLSIL------YSGLCADEVKIVDGPSKYPSCTC 420
VC S Y ++C L C + TN + + C + G + P C C
Sbjct: 260 VCSSHGVDYQSSCHLRHHACESKTNITVKFFGRCDPCHGHKCPNGQTCQLGVDRRPECKC 319
Query: 419 ----TREMKPVCGSDGITYNNDCLLNCATINDSR 330
T VCG+DG TY N+C L A + +
Sbjct: 320 SEQCTMNSAHVCGTDGKTYLNECFLKLAACKEQK 353
Score = 35.9 bits (79), Expect = 0.021
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Frame = -1
Query: 476 CADEVKIVDGPSKYPSCTCTREMK----------PVCGSDGITYNNDCLLNCATIN 339
C K V PS +P C C + VCGSDG TY+N C L N
Sbjct: 845 CFHGAKCVPSPSSFPDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCELKMFACN 900
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 55.6 bits (128), Expect = 2e-08
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Frame = -1
Query: 581 LNQVCGSDNHTYDNACLLNCATA-TNPGLSILYSGLCA-------DEVK------IVDGP 444
+ VC ++ T+DN C + + T + + + G C D K +VDG
Sbjct: 409 MRPVCATNGETFDNECEMKKKSCETKSMIKVKHQGTCGIGVCATFDSCKKPQVCVVVDGK 468
Query: 443 SKYPSCTCTREMKPVCGSDGITYNNDC-LLNCATINDSRLGIEYYGPC 303
K +CT E K VCGSDG TY+N+C L N A + + ++Y C
Sbjct: 469 PKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSAC 516
Score = 47.6 bits (108), Expect = 6e-06
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 20/114 (17%)
Frame = -1
Query: 584 DLNQVCGSDNHTYDNACLL-NCATATNPGLSILYSGLC-ADEVK---------IVDGPSK 438
+ +VCGSD TY N C L N A + + Y+ C A ++K V G ++
Sbjct: 479 EFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACEACKLKKEKCDFYSACVVGENE 538
Query: 437 YPSCTCT--------REMKPVCGSDGITYNNDCLLNCATINDSRLGI-EYYGPC 303
C C E K VCG+DG+TY+++C + + + S+ + + G C
Sbjct: 539 KAECKCPDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKC 592
Score = 37.5 bits (83), Expect = 0.007
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 20/110 (18%)
Frame = -1
Query: 572 VCGSDNHTYDNACLLNCATATNPGLSILYSGLCADEV-------------KIVDGPSKYP 432
VCG+D TY N C L A +++ DE V P +
Sbjct: 338 VCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSPCEKMECGFWGSCVVKPDRTA 397
Query: 431 SCTCTRE----MKPVCGSDGITYNNDCLL---NCATINDSRLGIEYYGPC 303
C C M+PVC ++G T++N+C + +C T S + +++ G C
Sbjct: 398 ECECPNRCEDVMRPVCATNGETFDNECEMKKKSCET--KSMIKVKHQGTC 445
Score = 36.7 bits (81), Expect = 0.012
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Frame = -1
Query: 572 VCGSDNHTYDNACLLN---CATATNPGLSIL------YSGLCADEVKIVDGPSKYPSCTC 420
VC S Y ++C L C + TN + + C + G + P C C
Sbjct: 268 VCSSHGVDYQSSCHLRHHACESKTNITVKFFGRCDPCHGHKCPNGQTCQLGVDRRPECKC 327
Query: 419 ----TREMKPVCGSDGITYNNDCLLNCATINDSR 330
T VCG+DG TY N+C L A + +
Sbjct: 328 SEQCTMNSAHVCGTDGKTYLNECFLKLAACKEQK 361
Score = 35.1 bits (77), Expect = 0.037
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Frame = -1
Query: 476 CADEVKIVDGPSKYPSCTCTREMK----------PVCGSDGITYNNDCLL 357
C K V PS +P C C + VCGSDG TY+N C L
Sbjct: 784 CFHGAKCVPSPSSFPDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCEL 833
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 572 VCGSDNHTYDNACLLNC-ATATNPGLSILYSGLCADE 465
VCGSD TY N C L A + + G+C DE
Sbjct: 819 VCGSDGTTYSNLCELKMFACKHQIDVVPVSMGICDDE 855
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 54.8 bits (126), Expect = 4e-08
Identities = 23/57 (40%), Positives = 30/57 (52%)
Frame = -1
Query: 464 VKIVDGPSKYPSCTCTREMKPVCGSDGITYNNDCLLNCATINDSRLGIEYYGPCADK 294
+ + G S P C C ++PVCG+D +TYNN C L C + L Y G C DK
Sbjct: 7 ILLFTGFSPPPDCDCPSVIRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTCCDK 63
Score = 53.2 bits (122), Expect = 1e-07
Identities = 26/73 (35%), Positives = 36/73 (49%)
Frame = -1
Query: 581 LNQVCGSDNHTYDNACLLNCATATNPGLSILYSGLCADEVKIVDGPSKYPSCTCTREMKP 402
+ VCG+DN TY+N C L C TN L Y+G C D+ + C + P
Sbjct: 25 IRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTCCDKKE------------CEKVGTP 72
Query: 401 VCGSDGITYNNDC 363
+C + G T+ NDC
Sbjct: 73 ICDNFGETHINDC 85
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = -1
Query: 572 VCGSDNHTYDNACLLN---CATATNPGLSILYSGLCADEVKIVDGPSKYPSCTCTREMKP 402
+CG++ T+ NAC L C +A N + + Y+G+C D C + P
Sbjct: 779 LCGTNGVTFTNACSLQKEICESA-NSTIEVAYTGMCCDT-------------NCPSDFSP 824
Query: 401 VCGSDGITYNNDC 363
VC S G T+ N C
Sbjct: 825 VCDSKGSTHQNIC 837
Score = 37.1 bits (82), Expect = 0.009
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 431 SCTCTREMKPVCGSDGITYNNDCLLN---CATINDSRLGIEYYGPCAD 297
S C P+CG++G+T+ N C L C + N S + + Y G C D
Sbjct: 769 SMECDNSYDPLCGTNGVTFTNACSLQKEICESAN-STIEVAYTGMCCD 815
Score = 35.5 bits (78), Expect = 0.028
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 422 CTREMKPVCGSDGITYNNDCLLNCATINDSRLGIEYYGPCAD 297
CT + P+C SD TY N C DS L + + G C++
Sbjct: 590 CTDDKHPICASDFSTYENLCQFRKQKCLDSELEVLFKGKCSE 631
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -1
Query: 584 DLNQVCGSDNHTYDNACLLNCATATNPGLSILYSGLCADEVKIVDGPSKYPS 429
D + +C SD TY+N C + L +L+ G C++ +D P P+
Sbjct: 593 DKHPICASDFSTYENLCQFRKQKCLDSELEVLFKGKCSE---CLDSPCALPA 641
Score = 32.3 bits (70), Expect = 0.26
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = -1
Query: 425 TCTREMKPVCGSDGITYNNDCLLNCATINDSRLGI-----EYYGPC 303
TC+R++KPVC T+ N C N +LGI Y PC
Sbjct: 374 TCSRDVKPVCDEANNTHQNLCHFQQYNCNMRKLGIRSPYLRYLRPC 419
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = -1
Query: 584 DLNQVCGSDNHTYDNAC---LLNCATATNPGLSILYSGLCADEVKIVDGPSKYPSCTCTR 414
D + VC S T+ N C + C G L D+ ++ + K + C +
Sbjct: 821 DFSPVCDSKGSTHQNICHFGVKRCIAERTFG-----DVLTIDKFEVCN-EVKECNNACPK 874
Query: 413 EMKPVCGSDGITYNNDCLLN 354
E PVC S+G N+C L+
Sbjct: 875 EYSPVCASNGQNIVNECELD 894
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = -1
Query: 404 PVCGSDGITYNNDCLLN---CATI--NDSRLGIEYYGPCADK 294
PVC ++G+T+ N CL++ C + N + + Y G C ++
Sbjct: 931 PVCDTEGVTHANMCLMDQNACIQMKKNKKTIQVSYQGQCCNQ 972
Score = 28.3 bits (60), Expect = 4.2
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = -1
Query: 572 VCGSDNHTYDNAC---LLNCATATNPGLSI--LYSGLCADEVKIVDGPSKYPSCTCTREM 408
+C + T+ N C C + GLS+ L+ G C+ + +CT T E
Sbjct: 73 ICDNFGETHINDCHFAQFQCIMKKSMGLSLTKLHMGRCSSK-------DCNHNCTNT-EF 124
Query: 407 KPVCGSDGITYNNDCL 360
PVC ++G Y N C+
Sbjct: 125 DPVCDTNGSVYRNLCV 140
Score = 28.3 bits (60), Expect = 4.2
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 12/102 (11%)
Frame = -1
Query: 572 VCGSDNHTYDNACLLN-----CATATNPGLSILYSGLCADEVKIVDGPSKYPSCTCTREM 408
VC S+ T+ N C+ T + L+I+++G C +C +
Sbjct: 1030 VCDSEGQTHMNHCVYQQRRCMAQTISQKTLNIVHTGECC------------ALASCPKTG 1077
Query: 407 KPVCGSDGIT-------YNNDCLLNCATINDSRLGIEYYGPC 303
+PVC S G T +N+ C+ + ++ L ++Y G C
Sbjct: 1078 QPVCDSRGRTHDSLCHFHNSKCIFDKIHTQNTTLTLDYQGKC 1119
>U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical
protein ZK813.6 protein.
Length = 251
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -1
Query: 431 SCTCTREMKPVCGSDG---ITYNNDCLLNCATINDSRLGIEYYGPC 303
+C+C E+ PVC +G TY+N C+ CA N L + Y G C
Sbjct: 24 TCSCKPEIDPVCVREGPYQYTYSNKCVFQCAQENKKDLVLLYEGSC 69
Score = 33.1 bits (72), Expect = 0.15
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = -1
Query: 584 DLNQVC---GSDNHTYDNACLLNCATATNPGLSILYSGLCADEVKIVDGPSKYPSCTCTR 414
+++ VC G +TY N C+ CA L +LY G C ++Y C
Sbjct: 30 EIDPVCVREGPYQYTYSNKCVFQCAQENKKDLVLLYEGSCCS--------ARY----CNM 77
Query: 413 EMKPVCGSDGITYNNDC 363
+PVC S+G Y C
Sbjct: 78 FEQPVC-SEGQMYQTVC 93
Score = 32.7 bits (71), Expect = 0.20
Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Frame = -1
Query: 578 NQVCGSDNHTYDNAC-LLN--C--ATATNPGLSILYSGLCADEVKIVDGPSKYPSCTCTR 414
N VC T+ N C LN C N L + YSG+C +++ C+ +
Sbjct: 130 NPVCDKKGQTHANFCTFLNSKCYHKNQLNESLEVDYSGVCCEDM-----------CSAGQ 178
Query: 413 EMKPVCGSDGITYNNDC---LLNCAT----INDSRLGIEYYGPCADK 294
VC S+G T+ + C + C I RL I GPC K
Sbjct: 179 TSLTVCDSEGNTHTDICSFYIAKCRQMRRGIGKKRLQIAGVGPCKPK 225
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = -1
Query: 455 VDGPSKYPSCT--CTREMKPVCGSDGITYNNDC-LLNCATINDSRLG----IEYYGPCAD 297
+D + SCT C E PVC G T+ N C LN + ++L ++Y G C +
Sbjct: 112 MDSSQEKCSCTAPCPTEWNPVCDKKGQTHANFCTFLNSKCYHKNQLNESLEVDYSGVCCE 171
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
K04H4.2c protein.
Length = 1446
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = -1
Query: 581 LNQVCGSDNHTYDNACLLNCATATNPGLSILYSGLCADEVKIVDGPSKYPSCTCTREMKP 402
+N +C + N C T + GL + +G+C D + +G S TCT E+
Sbjct: 1061 INGLCPTGYTVQGNLCCSATCTDGSTGLPSV-NGVCIDGYSLTNGVCCPASVTCTDEIS- 1118
Query: 401 VCGSDGITYNNDC 363
+ G +N C
Sbjct: 1119 IGPCTGTGFNGGC 1131
>Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical
protein K04H4.2b protein.
Length = 788
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = -1
Query: 581 LNQVCGSDNHTYDNACLLNCATATNPGLSILYSGLCADEVKIVDGPSKYPSCTCTREMKP 402
+N +C + N C T + GL + +G+C D + +G S TCT E+
Sbjct: 403 INGLCPTGYTVQGNLCCSATCTDGSTGLPSV-NGVCIDGYSLTNGVCCPASVTCTDEIS- 460
Query: 401 VCGSDGITYNNDC 363
+ G +N C
Sbjct: 461 IGPCTGTGFNGGC 473
>Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical
protein K04H4.2a protein.
Length = 628
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = -1
Query: 581 LNQVCGSDNHTYDNACLLNCATATNPGLSILYSGLCADEVKIVDGPSKYPSCTCTREMKP 402
+N +C + N C T + GL + +G+C D + +G S TCT E+
Sbjct: 403 INGLCPTGYTVQGNLCCSATCTDGSTGLPSV-NGVCIDGYSLTNGVCCPASVTCTDEIS- 460
Query: 401 VCGSDGITYNNDC 363
+ G +N C
Sbjct: 461 IGPCTGTGFNGGC 473
>U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily
assigned gene nameprotein 224 protein.
Length = 465
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 473 RKGPSTKC*GLGSWLWRSSTGKRCRTCGCR 562
R P+ +C GL WR K C+ CGCR
Sbjct: 43 RNLPTCRCEGLDLHFWR----KMCKNCGCR 68
>AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.6 protein.
Length = 335
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 494 ILYSGLCADEVKIVDGPS---KYPSCTCTREMKPVCGSDGITYNNDCLLNCATIN 339
I + L A + +V+G S K SC C +++P C TY +C+ N
Sbjct: 4 IAIAALLASSLLLVEGTSIRDKRQSCGCAPKIQPSCSCQRTTYTQPQQYSCSCQN 58
>AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.4 protein.
Length = 335
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 494 ILYSGLCADEVKIVDGPS---KYPSCTCTREMKPVCGSDGITYNNDCLLNCATIN 339
I + L A + +V+G S K SC C +++P C TY +C+ N
Sbjct: 4 IAIAALLASSLLLVEGTSIRDKRQSCGCAPKVQPSCSCQRTTYTQPQQYSCSCQN 58
>AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.3 protein.
Length = 335
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 494 ILYSGLCADEVKIVDGPS---KYPSCTCTREMKPVCGSDGITYNNDCLLNCATIN 339
I + L A + +V+G S K SC C +++P C TY +C+ N
Sbjct: 4 IAIAALLASSLLLVEGTSIRDKRQSCGCAPKIQPSCSCQRTTYTQPQQYSCSCQN 58
>AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.5 protein.
Length = 335
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 494 ILYSGLCADEVKIVDGPS---KYPSCTCTREMKPVCGSDGITYNNDCLLNCATIN 339
I + + A + +V+G S K SC C +++P C TY +C+ N
Sbjct: 4 IAIAAILASSLLLVEGTSIRDKRQSCGCAPKVQPSCSCQRTTYTQPQQYSCSCQN 58
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 368 RCCT*YRHCRRPASSRACTCTKGICWG 448
RCCT CR +R CTC + C G
Sbjct: 99 RCCT---CCRTCCCTRCCTCCRPCCCG 122
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 368 RCCT*YRHCRRPASSRACTCTKGICWG 448
RCCT CR +R CTC + C G
Sbjct: 97 RCCT---CCRTCCCTRCCTCCRPCCCG 120
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 368 RCCT*YRHCRRPASSRACTCTKGICWG 448
RCCT CR +R CTC + C G
Sbjct: 98 RCCT---CCRTCCCTRCCTCCRPCCCG 121
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 368 RCCT*YRHCRRPASSRACTCTKGICWG 448
RCCT CR +R CTC + C G
Sbjct: 98 RCCT---CCRTCCCTRCCTCCRPCCCG 121
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 368 RCCT*YRHCRRPASSRACTCTKGICWG 448
RCCT CR +R CTC + C G
Sbjct: 99 RCCT---CCRTCCCTRCCTCCRPCCCG 122
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 285 DYNLISARPVVFDAESGVIDCG 350
DY++I+ +PVV D SGVI G
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAG 23
>AL021475-1|CAA16312.1| 758|Caenorhabditis elegans Hypothetical
protein Y32F6B.1 protein.
Length = 758
Score = 27.5 bits (58), Expect = 7.4
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = -1
Query: 539 ACLLNCATATNPGLSILYSGLCADEVKIVDGP---SKYPSCTCTRE-MKPVCGSDGITYN 372
A L++ A T S++ G D++KI +GP C C + + PVC G Y
Sbjct: 479 AALISFANGTVGCKSVI--GQIGDQIKI-NGPVFDGCRDDCMCEQTPLYPVCDVSGSAYY 535
Query: 371 NDCLLNCA 348
+ C CA
Sbjct: 536 SPCHAGCA 543
>Z77131-1|CAB00854.1| 91|Caenorhabditis elegans Hypothetical
protein C54C6.1 protein.
Length = 91
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 73 RINKSNYF--KQLCQSCGILLNKKRSFSLSMKAVICRSKHCPKTTL*DLYERRMQFDYRG 246
R KS++ K+ C SCG KKR+++ K++ R+ +T R + +RG
Sbjct: 21 RCGKSSFHIQKKRCASCGYQDAKKRTYNWGAKSIRRRTTGTGRTRHLRDVNARFRNGFRG 80
Query: 247 RIP 255
P
Sbjct: 81 TTP 83
>U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical
protein F47E1.4 protein.
Length = 728
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -1
Query: 428 CTCTR-EMKPVCGSDGITYNNDCLLNC 351
C+C + PVC +DG Y + C C
Sbjct: 528 CSCENAHLYPVCSADGTAYFSPCHAGC 554
>AL032621-2|CAA21491.2| 147|Caenorhabditis elegans Hypothetical
protein Y45F3A.4 protein.
Length = 147
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 428 CTCTREMKPVCGSDGI--TYNNDCLLNCATINDSRLGIEY 315
C CT+E + V +DG+ T N CL+ ++ +GI Y
Sbjct: 27 CKCTKESETVTCTDGVCETENGSCLM----LDHPSMGIHY 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,775,395
Number of Sequences: 27780
Number of extensions: 280065
Number of successful extensions: 699
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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