Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14d23
(807 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 34 0.15
06_01_1179 + 10137652-10138038 33 0.27
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771 32 0.47
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 29 3.3
12_01_0373 + 2897874-2898911 29 5.8
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 28 7.6
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 28 7.6
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 33.9 bits (74), Expect = 0.15
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = -2
Query: 641 VIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTI 462
V ES+ AS+ E D+ +V K + +V + ES +S V + E SV +
Sbjct: 506 VEESAPTASSVETSEDDSTVDDKLVEPTASVSATEA-ESKEDSSEGSVASTE-SVTAVVE 563
Query: 461 VAAP--AVVVNDPIESSTGASATEVINDEALV 372
+AP +V + P ++ ASA E+I D V
Sbjct: 564 ESAPVSSVAIEVPAPEASEASAQEIIEDSTTV 595
>06_01_1179 + 10137652-10138038
Length = 128
Score = 33.1 bits (72), Expect = 0.27
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = +1
Query: 370 LTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSS-LITSVALAPVEDSITSFT 546
+ A++ I++ A AP E + + AAT PT S+ A AP TS
Sbjct: 12 ILTAAAAISAAAQAPAESPSPKPSKSTAAATPAKAPTVASAPRKAGPAAAPTTTVATS-- 69
Query: 547 TTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTPG 660
AG + + PT +++++ VA P + + F+ G
Sbjct: 70 APAGGDEVSIPPTPFATVVSPVADGPADAADADFSGAG 107
>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
Length = 372
Score = 32.3 bits (70), Expect = 0.47
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = -2
Query: 701 EVSGGFQKLLLQXLPGVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDVIESS 522
E S F+ L G+ DV+ +G V+ND+ G ++ VVV +
Sbjct: 264 EGSTDFRARLTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLI 323
Query: 521 TGASATEVINDEV 483
G A E+ ++E+
Sbjct: 324 LGVEAAEIGSEEI 336
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -2
Query: 569 IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVI 390
+ A A + DV+ +G V+ND+ G ++ VVV + G A E+
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332
Query: 389 NDE 381
++E
Sbjct: 333 SEE 335
>12_02_0953 -
24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 695 SGGFQKLLLQXLPGVVNDVIESSTGASATEVINDE 591
+ GF +L+++ L V +ST +SA+EV NDE
Sbjct: 13 AAGFSELMVRDLAAVRRTPARASTSSSASEVGNDE 47
>12_01_0373 + 2897874-2898911
Length = 345
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +1
Query: 493 LITSVALAPVEDSITSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTPGRXC 669
L+ ++A P S + TTT AAT T S+ TS + S+T+ T C
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTSTT-SNGATSVTAAATAAEQC 311
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +1
Query: 388 LITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA 564
L+ ++A P S + TTT AAT T S+ TS + TS T A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTST----TSNGATSVTAAATAA 308
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 28.3 bits (60), Expect = 7.6
Identities = 25/106 (23%), Positives = 43/106 (40%)
Frame = +1
Query: 373 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 552
T+ S TS + +P S + + + V PT + TS A +P S + + +
Sbjct: 1616 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1675
Query: 553 AGAATIVLEPTDTSSLITSVALAPVEDSITSFTTPGRXCNNSFWNP 690
+ PT S TS + +P S S T+P + ++P
Sbjct: 1676 YSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPAYSP 1720
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 278 YSNLVALRYLKLLVQPQPRLL*WFLL 355
Y+N AL+YL +PRLL W LL
Sbjct: 547 YTNHAALKYLLTKKDAKPRLLRWILL 572
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,600,612
Number of Sequences: 37544
Number of extensions: 313152
Number of successful extensions: 790
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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