Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14d21
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    26   4.6  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    25   6.1  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   8.0  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   8.0  

>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 437 YNNTSQYPFKQKVQVKHPHT 378
           Y    Q+PFK+  Q   PHT
Sbjct: 880 YAKVGQFPFKRLTQASSPHT 899


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/38 (21%), Positives = 18/38 (47%)
 Frame = -2

Query: 351 SEKHIWGTSHAESDLRSISYSCIQCGQLLCKTNAWGGC 238
           +E+ +      +  L   + +C+ CG+++C     G C
Sbjct: 190 AERRVCNCQGRKHPLNEAAPNCLNCGKIICIVEGIGPC 227


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 106 LQYHTFFMPSLPSTFKVL 159
           L+ H FF+P+LP + K L
Sbjct: 545 LEIHVFFLPALPVSLKEL 562


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = -3

Query: 569 QDVSNILVTSAKPVKHEVEKDIPFVEIPSLYPVKHTITMPHNHFYNNTSQYPFKQKVQVK 390
           Q  S+  +++  P+K + +K +     PS Y     +   HN   NN+S      K  V+
Sbjct: 124 QMTSSSNLSTVTPIKQDHQKPMNLQGFPSAYQQHQYLQSNHNVPTNNSSSATSSTKPSVQ 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,399
Number of Sequences: 5004
Number of extensions: 56714
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)