Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14d21
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465...    29   2.0  
09_04_0355 + 16922863-16924224                                         29   2.7  
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342...    28   6.2  
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765...    28   6.2  
03_04_0228 - 18989688-18989807,18990300-18990345,18990452-189905...    27   8.2  

>03_02_0913 +
           12344096-12344125,12344284-12345970,12346243-12346573,
           12346712-12347567,12347760-12347883,12348469-12348688,
           12348771-12349229,12349318-12349519
          Length = 1302

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -3

Query: 173 GVLQLNTLNVDGNEGIKNVWYCKNNMKLYDSSRYFSGMPVLENYNNKVYGY 21
           G+  + T+N+DG   +K  +  +  M +     Y SG+   E  N  +Y +
Sbjct: 290 GIAYIQTMNLDGESNLKTRYARQETMSMISDGSY-SGLIKCEQPNRNIYEF 339


>09_04_0355 + 16922863-16924224
          Length = 453

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 303 SISYSCIQCGQLLCKTNAWGGCQRPARADIRQLYSNGWTTISF 175
           S SY  ++C   LC       C RP     R  Y +G TT+ +
Sbjct: 145 SSSYEPMRCAGQLCGDILHHSCVRPDTCTYRYSYGDGTTTLGY 187


>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
            26834330-26834732,26834840-26835118,26835285-26835716,
            26836362-26836838,26837171-26837212,26837285-26837545,
            26837637-26838938,26839146-26839575,26839643-26840046,
            26840360-26840716,26840842-26841102,26841494-26842141,
            26842231-26842452,26842547-26842768,26842860-26843009,
            26843739-26844111,26844467-26844689,26845167-26845425,
            26845585-26845920,26846013-26846999,26848395-26849624,
            26849706-26849768,26849858-26849910,26849998-26850079,
            26850520-26850588,26851070-26851129,26851205-26851267,
            26851993-26852101,26852742-26852827,26853120-26853847,
            26854613-26854676
          Length = 3716

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 279  CGQLLCKTNAWGGCQRPARADIR 211
            C +LLC   AWG  + P  +D+R
Sbjct: 1260 CIELLCTAMAWGDLKAPNHSDLR 1282


>03_02_0774 +
           11074508-11074880,11076270-11076370,11076453-11076509,
           11076596-11076690,11077480-11077579,11078272-11078330,
           11078874-11079001,11079362-11079440,11079708-11079795,
           11080490-11080590,11080822-11080900,11081740-11081850,
           11082655-11082750,11082885-11083007,11085750-11085947,
           11086071-11086172,11086570-11086634,11086888-11087008,
           11088540-11088697,11088823-11088973,11089414-11089521,
           11089939-11090031,11090285-11090321,11090659-11090906,
           11091396-11091542,11091929-11092099,11092166-11092175,
           11093360-11093505
          Length = 1114

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -3

Query: 578 LQFQDVSNILVTSAKPVKHEVEKDIPFVEIPSLYPVKHTITMPHNHFYNNTSQY 417
           L+F + + +L  S+ P+  E +KD   +  P  +P K  I + +N  + + S +
Sbjct: 540 LEFYEENKLLQNSSLPLALEKDKDSRLLASPLKFPGKLAIDVLNNRLFISDSNH 593


>03_04_0228 -
           18989688-18989807,18990300-18990345,18990452-18990552,
           18990624-18990702,18990788-18990868,18991440-18991502,
           18994171-18994246,18994980-18995246,18995994-18996076,
           18996792-18996922,18997043-18997174
          Length = 392

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 155 TLNVDGNEGIKNVWYCKNNMKLYDSSRYFSGMPVL 51
           T    G +G  NVW   N  +LY  S+Y S +  L
Sbjct: 281 TFATGGCDGFVNVWDGINKKRLYQYSKYASSIAAL 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,762,455
Number of Sequences: 37544
Number of extensions: 331380
Number of successful extensions: 830
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)