Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14d21
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-6|CAB07691.2|  495|Caenorhabditis elegans Hypothetical pr...    45   3e-05
AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    29   2.4  
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    29   2.4  
AF003130-18|AAO38640.1|  441|Caenorhabditis elegans Prion-like-(...    28   4.2  
AF003130-17|AAB54127.1|  470|Caenorhabditis elegans Prion-like-(...    28   4.2  
AF003130-16|AAK68879.1|  457|Caenorhabditis elegans Prion-like-(...    28   4.2  
AF003130-15|AAM45365.1|  465|Caenorhabditis elegans Prion-like-(...    28   4.2  
Z69793-3|CAA93672.2|  709|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z92829-9|CAB07349.1|  360|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil...    27   9.6  
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil...    27   9.6  

>Z93393-6|CAB07691.2|  495|Caenorhabditis elegans Hypothetical
           protein Y48E1B.5 protein.
          Length = 495

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 34/158 (21%), Positives = 69/158 (43%), Gaps = 3/158 (1%)
 Frame = -3

Query: 491 IPSLYPVKHTITMPHNHFYNNTSQYPFKQKVQVKHPHTTWLHFNRTEVKNIYGEPVTQNQ 312
           +P +YP+   I    +  YN+      + + Q  H H+  + ++R + +     P T  Q
Sbjct: 329 LPDIYPISPVIDFSMDTIYNDDVLLTRRSQQQKTHIHS--ILWSREQDQKY---PWTSEQ 383

Query: 311 ILGRSLTHAFNVASSYAKQMHGEDVKDLPEPIFVNCIQTDGQLYHFGVLQLNTLNVD--- 141
            +  ++   +  A++ A+        +L +P+ V  +Q          +QLNTL      
Sbjct: 384 NMANAILTTY--AAAVAEATRNGATTELEKPLLVRGVQLVNGRLDLVAMQLNTLKPTSEA 441

Query: 140 GNEGIKNVWYCKNNMKLYDSSRYFSGMPVLENYNNKVY 27
           GN   KN+ + +  ++LY  + Y+  M  +E  +  V+
Sbjct: 442 GNNDEKNIVWIEKGLRLYKPTPYYEQMDTVEKLDMTVF 479


>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = -3

Query: 332 EPVTQNQILGRSLTHAFNVASSYAKQMHGEDVKDLPEPIFVNCIQTDGQLYHFGVLQLNT 153
           + +   +  GR L  + +V S +    HG+DV+D    +F +  +T  + +   + +LN 
Sbjct: 331 DSIATEEAKGRLLNESRDVLSEWLDHNHGKDVRD--HSVFDDLAKTYEKEFLADMARLNV 388

Query: 152 LNVD 141
           L VD
Sbjct: 389 LPVD 392


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = -3

Query: 332 EPVTQNQILGRSLTHAFNVASSYAKQMHGEDVKDLPEPIFVNCIQTDGQLYHFGVLQLNT 153
           + +   +  GR L  + +V S +    HG+DV+D    +F +  +T  + +   + +LN 
Sbjct: 330 DSIATEEAKGRLLNESRDVLSEWLDHNHGKDVRD--HSVFDDLAKTYEKEFLADMARLNV 387

Query: 152 LNVD 141
           L VD
Sbjct: 388 LPVD 391


>AF003130-18|AAO38640.1|  441|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform d protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = -3

Query: 173 GVLQLNTLNVDGNEGIKNVWYCKNNMKLYDSSRYFSGMPVLENYNNKVYGYINAFY 6
           G+L+   L + G +  K  W C+  ++ Y  SR+F   P L +  NK+  Y+++ +
Sbjct: 275 GLLKYCHLIIRGYKAAKP-WNCRK-LERYMCSRFFIDFPDLISQENKLRNYLDSHF 328


>AF003130-17|AAB54127.1|  470|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform a protein.
          Length = 470

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = -3

Query: 173 GVLQLNTLNVDGNEGIKNVWYCKNNMKLYDSSRYFSGMPVLENYNNKVYGYINAFY 6
           G+L+   L + G +  K  W C+  ++ Y  SR+F   P L +  NK+  Y+++ +
Sbjct: 304 GLLKYCHLIIRGYKAAKP-WNCRK-LERYMCSRFFIDFPDLISQENKLRNYLDSHF 357


>AF003130-16|AAK68879.1|  457|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform b protein.
          Length = 457

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = -3

Query: 173 GVLQLNTLNVDGNEGIKNVWYCKNNMKLYDSSRYFSGMPVLENYNNKVYGYINAFY 6
           G+L+   L + G +  K  W C+  ++ Y  SR+F   P L +  NK+  Y+++ +
Sbjct: 291 GLLKYCHLIIRGYKAAKP-WNCRK-LERYMCSRFFIDFPDLISQENKLRNYLDSHF 344


>AF003130-15|AAM45365.1|  465|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 44,
           isoform c protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = -3

Query: 173 GVLQLNTLNVDGNEGIKNVWYCKNNMKLYDSSRYFSGMPVLENYNNKVYGYINAFY 6
           G+L+   L + G +  K  W C+  ++ Y  SR+F   P L +  NK+  Y+++ +
Sbjct: 299 GLLKYCHLIIRGYKAAKP-WNCRK-LERYMCSRFFIDFPDLISQENKLRNYLDSHF 352


>Z69793-3|CAA93672.2|  709|Caenorhabditis elegans Hypothetical
           protein R03A10.3 protein.
          Length = 709

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
 Frame = -3

Query: 194 DGQLYHFGVLQLNT-----LNVDGNEGIKNVWY--CKNNMKLYDSSRYFSGMPVLENYN 39
           +G L ++G+ QL           G   I+N+ +  CKN + +  S ++ +G PV+E Y+
Sbjct: 260 EGTLNYYGIAQLQKGFEEIERCGGISSIRNLTHHLCKNALYMLKSKKHPNGRPVVEIYS 318


>Z92829-9|CAB07349.1|  360|Caenorhabditis elegans Hypothetical
           protein F10A3.13 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -3

Query: 533 PVKHEVEKDIP-FVEIPSLYPVKHTITMPHNHFY-NNTSQYPFKQKVQVKHPHT 378
           P + + E+ IP F+++  L+P ++T T PH ++  N+T ++ F     V   +T
Sbjct: 158 PSEMKDEEVIPEFLDVYCLHPNEYTYTGPHYYYTDNSTGKWKFHNPSFVAEGYT 211


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical
           protein B0024.8 protein.
          Length = 1185

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 24/93 (25%), Positives = 35/93 (37%)
 Frame = -3

Query: 572 FQDVSNILVTSAKPVKHEVEKDIPFVEIPSLYPVKHTITMPHNHFYNNTSQYPFKQKVQV 393
           FQD    +V S+   K      +P    P   P+KH I+ P     NN +     Q  + 
Sbjct: 623 FQDFDAAIVPSSMGKKSISHHSLPITSHP---PLKHAISQPQKRINNNGTFLRSGQGQRT 679

Query: 392 KHPHTTWLHFNRTEVKNIYGEPVTQNQILGRSL 294
           K    +  H   T V   Y    T N  + ++L
Sbjct: 680 K--SVSKPHRELTAVSKTYSLLDTSNMSVNQAL 710


>Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical
           protein W09D12.1 protein.
          Length = 472

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 482 LYPVKHTITMPHNHFYNNTSQYPFKQKVQVKHPHT-TWLHFNRTEVKNIYG 333
           L+ + H + +PH  FY  +  +P  + V + H    T  + +R  ++ IYG
Sbjct: 219 LHEIGHILGLPHT-FYRGSIMHPIFKPVLLPHGTVDTVPNVDRLAIRKIYG 268


>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
            protein 3, isoform b protein.
          Length = 1361

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -3

Query: 194  DGQLYHFGVLQLNTLNVDGNEGIKNVWYCKNNMKLYDSSRYFSGMPVLENYNNKV 30
            DG+L    +++   +N +G       W+  +NM  Y S   F   P    YN K+
Sbjct: 1015 DGRLGKMKMVENEVINPEGFYNYLTGWFNVDNMMYYVSQASFYPTPPGWEYNEKL 1069


>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
            protein 3, isoform a protein.
          Length = 1358

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -3

Query: 194  DGQLYHFGVLQLNTLNVDGNEGIKNVWYCKNNMKLYDSSRYFSGMPVLENYNNKV 30
            DG+L    +++   +N +G       W+  +NM  Y S   F   P    YN K+
Sbjct: 1012 DGRLGKMKMVENEVINPEGFYNYLTGWFNVDNMMYYVSQASFYPTPPGWEYNEKL 1066


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,165,418
Number of Sequences: 27780
Number of extensions: 319391
Number of successful extensions: 855
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)