Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14d20
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 35 0.011
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 33 0.025
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 32 0.058
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 28 0.95
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 0.95
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 28 1.3
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 28 1.3
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 28 1.3
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 1.3
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 27 1.7
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 27 1.7
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 27 2.9
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.9
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 27 2.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.9
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 26 3.8
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 26 3.8
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.7
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 25 8.8
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 34.7 bits (76), Expect = 0.011
Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Frame = -2
Query: 384 IANKLMKDNLQVNVPDNLIMNDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVT 205
++ K + DNL +N+I + K ++S + + QL ++ ++++ N ++
Sbjct: 785 LSKKALNDNL--GNKENIISDLKNKLSEESTRLQELQSQLNQDKNQIETLNERISAAADE 842
Query: 204 KEGEASILRTQLKSIQVAAD--SARLEKMNVQEKLQMEWTEKINAINNQM 61
SI + Q +++A S EK+N KL E TEKI+++ +
Sbjct: 843 LSSMESINKNQANELKLAKQKCSNLQEKINFGNKLAKEHTEKISSLEKDL 892
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = -2
Query: 228 KLIEKCVTKEGEASILRTQLKSIQVAA--DSARLEKMNVQEKLQMEWTEKINAINNQ--M 61
K + + + EA L + +SIQ +S + K N++E+ Q+ ++NQ +
Sbjct: 609 KSLREEIDNTKEALDLSVKERSIQEEKLNESLKTSKTNLEEQTQLAEKYHEELLDNQQKL 668
Query: 60 HDLRTQLDF 34
+DLR +LD+
Sbjct: 669 YDLRIELDY 677
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 33.5 bits (73), Expect = 0.025
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Frame = -2
Query: 324 NDK-IYEKQDSETIYKQLLQLQEENV----KLKSENGKLIE-KCVTKEG------EASIL 181
ND+ + EK + Q LQ+++ N+ KL +++ + +E KC E S+
Sbjct: 156 NDQALSEKNHEVMVSNQALQMKDTNLTNLEKLFADSREQLETKCKELAAAEQQLQELSVH 215
Query: 180 RTQLK-SIQVAADSARLEKMNVQEKLQMEWTEKINAINNQ 64
QL+ SI+ + S LEK+N +++LQ+ EK+ A +
Sbjct: 216 NQQLEESIKQVSSSIELEKINAEQRLQISELEKLKAAQEE 255
Score = 30.3 bits (65), Expect = 0.23
Identities = 33/139 (23%), Positives = 58/139 (41%)
Frame = -2
Query: 441 SISTQLKEKCNRISSPLPGIANKLMKDNLQVNVPDNLIMNDKIYEKQDSETIYKQLLQLQ 262
++ LK K + KL +++ Q N +L + + EKQ E +++
Sbjct: 66 NLKNDLKRKELEFEREQIELQRKLAEEHEQKN---SLQLRLTLVEKQLEEQSTSYQKEIE 122
Query: 261 EENVKLKSENGKLIEKCVTKEGEASILRTQLKSIQVAADSARLEKMNVQEKLQMEWTEKI 82
E + ++ K+ E K E + L+TQ++ A E M + LQM+ T
Sbjct: 123 EVRNEKEATQVKIHELLDAKWKEIAELKTQIEKNDQALSEKNHEVMVSNQALQMKDTNLT 182
Query: 81 NAINNQMHDLRTQLDFKVR 25
N + D R QL+ K +
Sbjct: 183 N-LEKLFADSREQLETKCK 200
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 32.3 bits (70), Expect = 0.058
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = -2
Query: 309 EKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEASILR 178
EK SET+ ++ L++EN LK ENG L EK E E + L+
Sbjct: 96 EKLASETLREKTQLLEKENGALKVENGYLYEKSRKLEEEMAHLK 139
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 28.3 bits (60), Expect = 0.95
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +2
Query: 248 LTFSSCS*SNCL*IVSESCFSYILSFIIKLSGTFTCKLSFISLFAMPGNGDEILLHFSFN 427
LT S + N L + + F+ + F+I L +F + ++ L A P E HFS
Sbjct: 346 LTLSDIA-KNYLLVPMKLLFTEPICFLITLYSSFVYAILYLLLEAYPIIFGE-KRHFSMG 403
Query: 428 CVDIEFVGFNVGV 466
++ ++G VGV
Sbjct: 404 VAELPYIGLLVGV 416
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.3 bits (60), Expect = 0.95
Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 11/125 (8%)
Frame = -2
Query: 378 NKLMKDNLQVNVPDNLI--MNDKIYEKQDSETIYKQLLQLQEEN---VKLKSENGKLIEK 214
NKL Q N D + + + K++ T ++LL+ Q ++ ++L E +L +
Sbjct: 488 NKLTSLQEQNNEFDRQLKEQEEDLQNKEEELTELRKLLREQTQDSQKLRLLVEQLELERQ 547
Query: 213 CVTKEGE------ASILRTQLKSIQVAADSARLEKMNVQEKLQMEWTEKINAINNQMHDL 52
+ + GE +S TQ+KS++ + +++ E ++ QEK IN +N+Q+ +L
Sbjct: 548 DLKQAGENHYSNLSSDYETQIKSLESSLTNSQAECVSFQEK--------INELNSQIDEL 599
Query: 51 RTQLD 37
+ +L+
Sbjct: 600 KLKLN 604
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/112 (16%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Frame = -2
Query: 369 MKDNLQVNVPDNLIMNDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVT-KEGE 193
+KD ++ + N + +YE ++ +T+ + LL E ++ E + E+ ++ K E
Sbjct: 347 LKDENELFMKQNQLYRTILYETRNKKTLVQNLLNSLEGKLQAHLEKFEQTERDISEKNEE 406
Query: 192 ASILRTQLKSIQVAADSARLEKMNVQEKLQMEWTEKINAINNQMHDLRTQLD 37
LR + ++ S + + + +++ ++ E++ + N+ L+ ++
Sbjct: 407 VKSLREKAAKVKNDCTSEKKTRQSYEQQ-TVKIEEQLKFLLNKEKKLKKSIE 457
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -2
Query: 426 LKEKCNRISSPLPGIANKLMKDNLQVNVPDNLIMNDKIYEKQDSETIYKQLLQLQEENVK 247
+ +K +++ S L I K D L+ NV + K+D + ++ + L+ N +
Sbjct: 91 IHKKISQVQSLLKIIEKKCSSDFLEANVKSQFTTCENKDSKEDYQILHNKRLEYVSFNDE 150
Query: 246 LKS-ENGK 226
LKS E G+
Sbjct: 151 LKSLETGQ 158
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.9 bits (59), Expect = 1.3
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = -2
Query: 426 LKEKCNRISSPLPGIANKLMKDNLQVN--VPDNLIMNDKI--YEKQDSETI-YKQLLQLQ 262
L +K I L K M+D L++ +N ++ +I ++ SE KQ+LQLQ
Sbjct: 127 LIQKLEIIEKKLDKSFRKNMEDELRITRLASENNVLISRIDRTKRHFSELFTQKQMLQLQ 186
Query: 261 EENVKLKSENGKLIEKCVTKEGEASILRTQLKSIQV 154
EN K E K K + KE ++ + + + + ++
Sbjct: 187 NENFKDDYEKIKEENKRLYKERKSFLSKIEKSACEI 222
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = -2
Query: 201 EGEASILRTQLKSIQVAADSARLEKMNVQEKLQMEWTEKINAINNQMHDLRTQL 40
E SI R + K + A S +LEK N+Q +L +E+ A+ +++DL L
Sbjct: 680 ESLKSISRNKEKKFEEAISSLQLEKSNIQLQLTSLTSERSLAL-EKLNDLEKSL 732
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +2
Query: 275 NCL*IVSESCFSYILSFIIKLSGTFTCKLSFISLFAMPGNGDEILLHFSFNCVDIEFVGF 454
N L + + F+ + F+I L +F + ++ L A P E HFS ++ ++G
Sbjct: 353 NYLLVPMKLLFTEPIVFLITLYSSFVYAILYLLLEAYPIIFSE-KRHFSMGVAELPYIGL 411
Query: 455 NVGV 466
VGV
Sbjct: 412 LVGV 415
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 27.5 bits (58), Expect = 1.7
Identities = 24/72 (33%), Positives = 39/72 (54%)
Frame = -2
Query: 246 LKSENGKLIEKCVTKEGEASILRTQLKSIQVAADSARLEKMNVQEKLQMEWTEKINAINN 67
L +E K + ++ E ++S RT+LK IQ S R +N +E +EKI A NN
Sbjct: 80 LHTEGAKSKTENISGEDKSSQRRTRLKQIQEFI-SHRRSFLNSNAN-SVE-SEKILAENN 136
Query: 66 QMHDLRTQLDFK 31
M +++++L K
Sbjct: 137 HMFNVKSKLSNK 148
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 26.6 bits (56), Expect = 2.9
Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 1/141 (0%)
Frame = -2
Query: 462 PTLNPTNSISTQLKEKCNRISSPLPGIANKLMKDNLQVNVPDNLIMNDKIYEKQDSETIY 283
P+L TN S + ++SPL N + + P + +N K D E
Sbjct: 126 PSLAVTNLNSDETNTSSEPVTSPLRTTPNSIKRQKRLFKSPISNCLN----PKSDPE--- 178
Query: 282 KQLLQLQEENVKLKSENGKLIEKCVTKEGEASI-LRTQLKSIQVAADSARLEKMNVQEKL 106
+ QL +KL+ E L E+ +T E + + + K +Q + E L
Sbjct: 179 --ITQLLSRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVL 236
Query: 105 QMEWTEKINAINNQMHDLRTQ 43
E+I R +
Sbjct: 237 FKPMAERIRLAGGVTQSFRIE 257
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = -1
Query: 505 TASTAKHFQKHIQNPNIESHEFNIYTIKRKMQQNFIPIT 389
T++ K+ + H+QNPN S +F + +R + + + +T
Sbjct: 295 TSTLEKYKKMHLQNPNNFSLDFTLSIFERLRKDSSLQLT 333
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 339 DNLIMNDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIE 217
D L+M + + D ET+ QL LQEE + E +LI+
Sbjct: 416 DKLLMQQQSQQTGDLETLRLQLQALQEELRVEREERQQLIQ 456
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 2.9
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Frame = -2
Query: 459 TLNPTNSISTQLKEKCNRISSPLPGIANKLMKDNLQVNVPDNLI--MNDKIYEKQDS-ET 289
T N + L+ CN L +L ++ + D +N+ E +++ +T
Sbjct: 568 TNNELSESKNSLQTLCNAFQEKLAKSVMQLKENEQNFSSLDTSFKKLNESHQELENNHQT 627
Query: 288 IYKQLLQLQEENVKLKSENGKLIEKCVTKEGEASILRTQLKSIQ 157
I KQL + +L+ E +K T E + LRT+L ++
Sbjct: 628 ITKQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRTKLLKLE 671
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.2 bits (55), Expect = 3.8
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -2
Query: 360 NLQVNVPDNLIMNDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGE 193
NL+V D L+ K + + +++ ++QLL L E L N LI+ T E
Sbjct: 908 NLEVQTLDRLLQKVKEHSEDNTKEKHQQLLDLLE---SLVGNNDNLIDSIKTPHTE 960
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 26.2 bits (55), Expect = 3.8
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Frame = -2
Query: 363 DNLQVNVPDNLIMNDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEASI 184
++ +N+ +L + +++Y ++D E Y LQLQ + ++E E SI
Sbjct: 174 ESAYLNLRSHLQVQEQVYAEKDHE--YS--LQLQSYREAAEKAKQDILETKENLSSELSI 229
Query: 183 LRTQLKSIQVAADSARLEKMNVQ-EKLQMEWTEKINAINNQMHDLRTQLD 37
QLK + RLE N +KL+ E E + H L L+
Sbjct: 230 SNIQLKEAK-----ERLEAANASYQKLRREHKELALYHEKKTHSLVCNLN 274
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/64 (26%), Positives = 35/64 (54%)
Frame = -2
Query: 321 DKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEASILRTQLKSIQVAADS 142
DK+ E D+ET ++LL ++++ K +I+K +E + + L+T+ + +
Sbjct: 44 DKLLEANDNETTKRKLL-VKQKRKSNKEFQSNIIKKRKDEERKGT-LKTEQANEEELLQR 101
Query: 141 ARLE 130
+RLE
Sbjct: 102 SRLE 105
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 25.0 bits (52), Expect = 8.8
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = -2
Query: 309 EKQDSETIYKQLLQLQEENVKLKSENGKLIEKCVTKEGEASILRTQLKSIQVAADSARLE 130
EK+++E +Y +LL L + N K +CV EA ++ KSIQVA+ +
Sbjct: 107 EKEENELVYCRLLVEDILKYLLPATNSKSEIECVILR-EALAVQIH-KSIQVASSPETMY 164
Query: 129 K 127
K
Sbjct: 165 K 165
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,122
Number of Sequences: 5004
Number of extensions: 43485
Number of successful extensions: 159
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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