Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14d20
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.45 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.4  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    23   3.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.3  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 477 NIFKTPTLNPTNSISTQLKEKCNRISSPLPGIANKLMKDN 358
           N FKT T  P N+     K     I+   PG+  K + DN
Sbjct: 136 NAFKTLTQEPKNTNKFLEKGPVALINELYPGVVYKCVSDN 175


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -2

Query: 120 VQEKLQMEWTEKINAINNQM 61
           V+EK Q+ + E++NA+  ++
Sbjct: 45  VEEKTQLRYLEELNALRTEL 64


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 426 LKEKCNRISSPLPGIANKLMKDNLQVNVP 340
           L   CNR +S   GIAN L+   +Q N P
Sbjct: 61  LNNHCNRCTSRQIGIANTLI-PFMQQNYP 88


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 78  HLFSLSIPSAVFLAHSFSLAW 140
           HLF   IPSA+ +  S+   W
Sbjct: 216 HLFHTYIPSALIVVMSWIAFW 236


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 552 GYRCRHFHR 578
           GYRCR  HR
Sbjct: 206 GYRCRTMHR 214


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 552 GYRCRHFHR 578
           GYRCR  HR
Sbjct: 206 GYRCRTMHR 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,701
Number of Sequences: 438
Number of extensions: 2808
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)