Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14d15
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    54   1e-08
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    53   4e-08
SPCC1442.15c |cox18||mitochondrial inner membrane protein Cox18|...    52   6e-08
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   2.7  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   3.5  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.7  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    26   4.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   8.1  

>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 32/109 (29%), Positives = 50/109 (45%)
 Frame = -2

Query: 376 GGLGWIPNLTEPDHSLILPVAFGFINLTIIEIQRLSKLRQPSKMHNVFTNVFRVFSIIMI 197
           GG  W+ +L++PD   I PVA G + L  IE+   +   + + M       FR   +   
Sbjct: 223 GGFWWVNDLSQPDPLHIFPVANGLLMLLNIELGSETGSNKVA-MSPSMKKFFRFLCLASP 281

Query: 196 PVAASVPSCMCLYWTTSSSIGLMHNLILLSPTLRRKLKIPEAPSEIDRP 50
               + P  + +YW  S+   +     L S T+R KL +PE PS +  P
Sbjct: 282 LFTMNFPMAIFMYWFPSNVFSVFQGAFLRSSTIRHKLGLPEVPSAMPVP 330


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 36/157 (22%), Positives = 70/157 (44%)
 Frame = -2

Query: 523 RDNCHPFKASLVILIQIPIWVCMSFALRNLVYLQSGDPSLLITFMELSAGGLGWIPNLTE 344
           + N +PF   ++ L Q  ++    +A+R +  L              + GGL W  +L+ 
Sbjct: 154 KHNVNPFAIFILPLTQSAVFFSFFYAIRKMSRLSVDG---------FTTGGLAWFKDLSI 204

Query: 343 PDHSLILPVAFGFINLTIIEIQRLSKLRQPSKMHNVFTNVFRVFSIIMIPVAASVPSCMC 164
           PD   ILP+    +  + +++ R +         N +   F +  ++   + A +P+ + 
Sbjct: 205 PDPYCILPIINAGLMFSGMQMNRANTASTIGNSTN-WRTFFFLCCLLSPLLTAKLPAAIF 263

Query: 163 LYWTTSSSIGLMHNLILLSPTLRRKLKIPEAPSEIDR 53
           +YW  SS   ++   IL +P +R KL     PS I++
Sbjct: 264 MYWIPSSLFNIVQGYILKNPVVRSKLGFAPLPSIIEK 300


>SPCC1442.15c |cox18||mitochondrial inner membrane protein
           Cox18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 202

 Score = 52.0 bits (119), Expect = 6e-08
 Identities = 37/140 (26%), Positives = 62/140 (44%)
 Frame = -2

Query: 532 LIERDNCHPFKASLVILIQIPIWVCMSFALRNLVYLQSGDPSLLITFMELSAGGLGWIPN 353
           L +R NCHP     + + Q+P++   S+ LR  V          +    +S  G+ W  +
Sbjct: 71  LYKRFNCHPLMIYALPITQLPLFAFASYQLRQAVD---------VCPESMSTEGMLWFTD 121

Query: 352 LTEPDHSLILPVAFGFINLTIIEIQRLSKLRQPSKMHNVFTNVFRVFSIIMIPVAASVPS 173
           LT PD   +LP       LT + I    K    S++  +F     + +  +  +A    +
Sbjct: 122 LTLPDPHGVLPAVLAVTYLTNMSI---LKRPSDSRLLKIFNTAGIMSAFFVSFMAFKTST 178

Query: 172 CMCLYWTTSSSIGLMHNLIL 113
            + LYWTTS+   L+ N+ L
Sbjct: 179 ALSLYWTTSAIYSLVQNVAL 198


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 104  NTEEKVKNTRSTK*NRQTLSTYKRRTSTNNKKN 6
            N   +V N  ST  +R+  S    RTS +NK++
Sbjct: 1480 NRNPRVSNNNSTNVSRERSSEANHRTSNDNKRD 1512


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -1

Query: 386 VVSWWTWLDTKLNRTRSF--FNITSSFWF 306
           VVS WTW  T L   +    + ++ +FW+
Sbjct: 62  VVSSWTWASTLLTSAQKTYQYGVSGAFWY 90


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 11  FYCLLKFFFYML-IRSVYFTWCFWYF 85
           F CLL FFF++L   S  F++ F +F
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFF 138


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 236 IHKCFPSVFYNNDTCSSQCSILYVFILD 153
           + +  P  + N   C S C I+Y FI D
Sbjct: 307 VRELAPEFYDNIPDCKSWCGIIYQFITD 334


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 437  LGVPAKWRSISVDHI 393
            LG+ A WRS+S+D +
Sbjct: 1521 LGIEASWRSLSIDSL 1535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,725
Number of Sequences: 5004
Number of extensions: 51526
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)