Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14d15
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0111 + 884501-884970,885069-885147,885530-885574,885838-88... 68 6e-12
10_08_0659 + 19647037-19647464,19647569-19647659,19648998-196490... 63 1e-10
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 35 0.055
03_03_0254 + 15884149-15884295,15884765-15884803,15884958-158851... 31 0.68
01_01_0348 + 2769295-2769660,2770082-2770192,2770284-2770358,277... 30 1.2
04_04_0385 - 24858580-24858721,24858772-24858850,24859155-248593... 29 2.7
10_08_0978 + 21994359-21996961,21997089-21998229 28 4.8
03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232... 28 4.8
12_02_0636 + 21433109-21433450,21433538-21434089 28 6.3
10_08_0964 + 21906737-21907993 28 6.3
12_01_0074 - 615794-615883,616186-616391,616524-616614 27 8.3
>03_01_0111 +
884501-884970,885069-885147,885530-885574,885838-885903,
886362-886420,886626-886701,886825-886956,887046-887153,
887679-887733,887822-888042
Length = 436
Score = 67.7 bits (158), Expect = 6e-12
Identities = 45/158 (28%), Positives = 69/158 (43%)
Frame = -2
Query: 550 KKQWVNLIERDNCHPFKASLVILIQIPIWVCMSFALRNLVYLQSGDPSLLITFMELSAGG 371
K++ L R P + IQ PI++ FA+ N+V PS GG
Sbjct: 231 KRKLGELFLRHGVTPLTPLKGLFIQAPIFMSFFFAISNMV---EKVPSF-------KGGG 280
Query: 370 LGWIPNLTEPDHSLILPVAFGFINLTIIEIQRLSKLRQPSKMHNVFTNVFRVFSIIMIPV 191
+ W +LT PD LILP+ L +E+ + + + M N RV +++ IP
Sbjct: 281 IYWFTDLTTPDELLILPMLTSLTFLVTVELNMQDGM-EGNPMLKTMKNFSRVMAVLTIPF 339
Query: 190 AASVPSCMCLYWTTSSSIGLMHNLILLSPTLRRKLKIP 77
S P + YW TS+ L + +L P +R L +P
Sbjct: 340 TMSFPKAIFFYWVTSNLFSLGYGFVLRKPAVRSFLDLP 377
>10_08_0659 +
19647037-19647464,19647569-19647659,19648998-19649039,
19649179-19649237,19649559-19649634,19649735-19649866,
19650251-19650358,19651040-19651094,19651187-19651437
Length = 413
Score = 63.3 bits (147), Expect = 1e-10
Identities = 43/158 (27%), Positives = 71/158 (44%)
Frame = -2
Query: 550 KKQWVNLIERDNCHPFKASLVILIQIPIWVCMSFALRNLVYLQSGDPSLLITFMELSAGG 371
K + L ++ PF +LIQ PI++ FA+RN++ PS+ GG
Sbjct: 198 KAKMTALFQKHGVSPFTPLKGLLIQGPIFMSFFFAIRNMI---DKVPSM-------KGGG 247
Query: 370 LGWIPNLTEPDHSLILPVAFGFINLTIIEIQRLSKLRQPSKMHNVFTNVFRVFSIIMIPV 191
W +LT PD ILPV I L +E+ L + + + M N R +++ +P
Sbjct: 248 SLWFTDLTTPDPLYILPVLTALIFLVTVEL-NLQEGMEGNPMARKMKNFSRGMAVLTVPF 306
Query: 190 AASVPSCMCLYWTTSSSIGLMHNLILLSPTLRRKLKIP 77
S + YW TS+ L + ++ P +R+ +P
Sbjct: 307 TMSFAKGIFCYWITSNLFTLTYGFVIRRPAVRKFCNLP 344
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 34.7 bits (76), Expect = 0.055
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Frame = -2
Query: 388 ELSAGGLGWIPNLTEPDH---SLILPVAFGFINLTIIEIQ-RLSKLRQPSKMHNVFTNVF 221
E S GG+ W NLTE H L+ P ++ I+I + + + V +
Sbjct: 267 EQSMGGILWFHNLTEFPHGSSGLVFPTLVAGLHYLNIQIAFHGTHTKHYPGIFGVLAKYY 326
Query: 220 RVF-SIIMIP---VAASVPSC----MCLYWTTSSSIGLMHNLILLSPTLRRKLKIPE 74
RV+ I+ IP + +P +YWTT+ I + L L + +++ L +P+
Sbjct: 327 RVYLEILTIPLFLIGYVIPQITIQGSLVYWTTNGLITVAQQLSLKNDAVKKVLGLPD 383
>03_03_0254 +
15884149-15884295,15884765-15884803,15884958-15885136,
15887175-15887310,15887769-15887865,15888448-15888534,
15888621-15888721,15888905-15888939,15889520-15889577,
15889650-15889724,15890048-15890135,15890155-15890308,
15890395-15890638
Length = 479
Score = 31.1 bits (67), Expect = 0.68
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = -2
Query: 355 NLTEPDHSLILPVAFGFINLTIIEIQRLSKLRQPSKMHNVFTNVFRVFSIIMIPVAASVP 176
N EPD S+++ ++ I+ ++ R SKL K+ V +FRV I++ A +VP
Sbjct: 411 NQPEPDSSVLVEMSSEMISEDGGKVPRSSKL----KIRRVLQRLFRVIQSIVVIAALNVP 466
Query: 175 SCMCL 161
M L
Sbjct: 467 LYMML 471
>01_01_0348 +
2769295-2769660,2770082-2770192,2770284-2770358,
2770566-2770626,2770853-2770926,2771004-2771108,
2771475-2771582,2771681-2771784,2771939-2772088,
2772163-2772286,2772746-2772925
Length = 485
Score = 30.3 bits (65), Expect = 1.2
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 18/155 (11%)
Frame = -2
Query: 553 LKKQWVNLIERDNCHPFKASLVILIQIPIWVCMSFALRNLV---YLQSGD---PSL---L 401
++ + L ++ +P L IP+W+ + AL N+ L G PSL
Sbjct: 187 IQLETARLYKQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGGPT 246
Query: 400 ITFMELSAGGLGWI-------PNLTEPDHS--LILPVAFGFINLTIIEIQRLSKLRQPSK 248
S G+ W+ P L D L+LPV +EI + + PS+
Sbjct: 247 TIAARQSGAGISWLLPFVDGHPPLGWHDTICYLVLPVLLVASQFVSMEIMKPPQTDDPSQ 306
Query: 247 MHNVFTNVFRVFSIIMIPVAASVPSCMCLYWTTSS 143
+ + F F I + SVPS + +YW T++
Sbjct: 307 KNTLLVLKFLPFMIGWFSL--SVPSGLSIYWFTNN 339
>04_04_0385 -
24858580-24858721,24858772-24858850,24859155-24859302,
24859939-24860239,24860327-24860407,24860727-24860875,
24861073-24861215,24861404-24861556,24861664-24861742,
24861851-24861916
Length = 446
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 473 PYMGLHVFCIEKLGVPAKWRSISVDHIYGVVSWWTW 366
P M L K+ V A W + HI+GV+ W W
Sbjct: 410 PRMNLRSGLKLKIEVEALWHTRMPTHIFGVILSWNW 445
>10_08_0978 + 21994359-21996961,21997089-21998229
Length = 1247
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 488 NIDPNPYMGLHVFCIEKLGVPAKWRSISVDHIYGVVSWWTWL 363
++DP MG+ V + + G A+WR +VD + + W T L
Sbjct: 1031 SMDPPVSMGMEVLTVGEPG--ARWRETAVDPPHPITRWRTAL 1070
>03_02_0726 +
10722759-10722857,10722969-10723058,10723141-10723245,
10723597-10723698,10724721-10724805,10725281-10725365,
10725473-10725517,10725685-10728672,10728839-10729055,
10729193-10729765
Length = 1462
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 378 ADNSINVINRDGSPLCRYTKFLNAKDMQTHIGI 476
A +S N +N+DGSPL R T+ + AK + I +
Sbjct: 668 AQDSGNALNQDGSPLMRKTENVLAKVRTSDISL 700
>12_02_0636 + 21433109-21433450,21433538-21434089
Length = 297
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 189 ATGIIIIENTRKTFVNTLCILEGCLS 266
AT I I ++ R+ FVN+LC GC +
Sbjct: 260 ATEIFIKKDQREMFVNSLCTPAGCFA 285
>10_08_0964 + 21906737-21907993
Length = 418
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 467 MGLHVFCIEKLGVPAKWRSISVDHIYGVVSWWT 369
MG+ VF + + G WR D Y V W T
Sbjct: 216 MGMEVFTVGETGAGCGWRETVTDPPYPVSRWLT 248
>12_01_0074 - 615794-615883,616186-616391,616524-616614
Length = 128
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 96 LSVGERRIKLCINPILLDVVQYKHIQDGTLAATGII 203
L + ERRI++ +L + +YK D LAAT I
Sbjct: 59 LYINERRIEIEARALLATIARYKKQTDQWLAATNAI 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,435,764
Number of Sequences: 37544
Number of extensions: 295552
Number of successful extensions: 803
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -