Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14d15
(584 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC101684-1|AAI01685.1| 333|Homo sapiens COX18 cytochrome c oxid... 155 8e-38
AY957565-1|AAY35061.1| 333|Homo sapiens mitochondrial COX18 pro... 155 8e-38
AY957564-1|AAY35060.1| 333|Homo sapiens mitochondrial COX18 pro... 155 8e-38
AK096310-1|BAC04758.1| 333|Homo sapiens protein ( Homo sapiens ... 155 8e-38
AM055750-1|CAJ20055.1| 253|Homo sapiens Cox18Hs1 protein protein. 155 1e-37
X80695-1|CAA56712.1| 435|Homo sapiens OXA1Hs protein. 58 2e-08
BC112331-1|AAI12332.1| 496|Homo sapiens oxidase (cytochrome c) ... 58 2e-08
BC001669-1|AAH01669.2| 437|Homo sapiens OXA1L protein protein. 58 2e-08
AJ001981-1|CAA05127.1| 495|Homo sapiens OXA1L protein. 58 2e-08
>BC101684-1|AAI01685.1| 333|Homo sapiens COX18 cytochrome c oxidase
assembly homolog (S. cerevisiae) protein.
Length = 333
Score = 155 bits (377), Expect = 8e-38
Identities = 75/182 (41%), Positives = 113/182 (62%)
Frame = -2
Query: 583 KQCAILYKRSLKKQWVNLIERDNCHPFKASLVILIQIPIWVCMSFALRNLVYLQSGDPSL 404
+ + Y +++++ L RDNCHPFKA++++ IQ+P+W+ MSFALRNL +
Sbjct: 142 RDARLTYLKNMRRLISELYVRDNCHPFKATVLVWIQLPMWIFMSFALRNLSTGAAHSEGF 201
Query: 403 LITFMELSAGGLGWIPNLTEPDHSLILPVAFGFINLTIIEIQRLSKLRQPSKMHNVFTNV 224
+ +L+ GG+ W P+LT PD + ILP++ G INL I+EI L K+ S+ T
Sbjct: 202 SVQ-EQLATGGILWFPDLTAPDSTWILPISVGVINLLIVEICALQKIGM-SRFQTYITYF 259
Query: 223 FRVFSIIMIPVAASVPSCMCLYWTTSSSIGLMHNLILLSPTLRRKLKIPEAPSEIDRPYQ 44
R S++MIP+AA+VPS + LYW SS +GL NL+L SP R+ +IP S+ + PY+
Sbjct: 260 VRAMSVLMIPIAATVPSSIVLYWLCSSFVGLSQNLLLRSPGFRQLCRIPSTKSDSETPYK 319
Query: 43 HI 38
I
Sbjct: 320 DI 321
>AY957565-1|AAY35061.1| 333|Homo sapiens mitochondrial COX18
protein.
Length = 333
Score = 155 bits (377), Expect = 8e-38
Identities = 75/182 (41%), Positives = 113/182 (62%)
Frame = -2
Query: 583 KQCAILYKRSLKKQWVNLIERDNCHPFKASLVILIQIPIWVCMSFALRNLVYLQSGDPSL 404
+ + Y +++++ L RDNCHPFKA++++ IQ+P+W+ MSFALRNL +
Sbjct: 142 RDARLTYLKNMRRLISELYVRDNCHPFKATVLVWIQLPMWIFMSFALRNLSTGAAHSEGF 201
Query: 403 LITFMELSAGGLGWIPNLTEPDHSLILPVAFGFINLTIIEIQRLSKLRQPSKMHNVFTNV 224
+ +L+ GG+ W P+LT PD + ILP++ G INL I+EI L K+ S+ T
Sbjct: 202 SVQ-EQLATGGILWFPDLTAPDSTWILPISVGVINLLIVEICALQKIGM-SRFQTYITYF 259
Query: 223 FRVFSIIMIPVAASVPSCMCLYWTTSSSIGLMHNLILLSPTLRRKLKIPEAPSEIDRPYQ 44
R S++MIP+AA+VPS + LYW SS +GL NL+L SP R+ +IP S+ + PY+
Sbjct: 260 VRAMSVLMIPIAATVPSSIVLYWLCSSFVGLSQNLLLRSPGFRQLCRIPSTKSDSETPYK 319
Query: 43 HI 38
I
Sbjct: 320 DI 321
>AY957564-1|AAY35060.1| 333|Homo sapiens mitochondrial COX18
protein.
Length = 333
Score = 155 bits (377), Expect = 8e-38
Identities = 75/182 (41%), Positives = 113/182 (62%)
Frame = -2
Query: 583 KQCAILYKRSLKKQWVNLIERDNCHPFKASLVILIQIPIWVCMSFALRNLVYLQSGDPSL 404
+ + Y +++++ L RDNCHPFKA++++ IQ+P+W+ MSFALRNL +
Sbjct: 142 RDARLTYLKNMRRLISELYVRDNCHPFKATVLVWIQLPMWIFMSFALRNLSTGAAHSEGF 201
Query: 403 LITFMELSAGGLGWIPNLTEPDHSLILPVAFGFINLTIIEIQRLSKLRQPSKMHNVFTNV 224
+ +L+ GG+ W P+LT PD + ILP++ G INL I+EI L K+ S+ T
Sbjct: 202 SVQ-EQLATGGILWFPDLTAPDSTWILPISVGVINLLIVEICALQKIGM-SRFQTYITYF 259
Query: 223 FRVFSIIMIPVAASVPSCMCLYWTTSSSIGLMHNLILLSPTLRRKLKIPEAPSEIDRPYQ 44
R S++MIP+AA+VPS + LYW SS +GL NL+L SP R+ +IP S+ + PY+
Sbjct: 260 VRAMSVLMIPIAATVPSSIVLYWLCSSFVGLSQNLLLRSPGFRQLCRIPSTKSDSETPYK 319
Query: 43 HI 38
I
Sbjct: 320 DI 321
>AK096310-1|BAC04758.1| 333|Homo sapiens protein ( Homo sapiens
cDNA FLJ38991 fis, clone NT2RI2008622. ).
Length = 333
Score = 155 bits (377), Expect = 8e-38
Identities = 75/182 (41%), Positives = 113/182 (62%)
Frame = -2
Query: 583 KQCAILYKRSLKKQWVNLIERDNCHPFKASLVILIQIPIWVCMSFALRNLVYLQSGDPSL 404
+ + Y +++++ L RDNCHPFKA++++ IQ+P+W+ MSFALRNL +
Sbjct: 142 RDARLTYLKNMRRLISELYVRDNCHPFKATVLVWIQLPMWIFMSFALRNLSTGAAHSEGF 201
Query: 403 LITFMELSAGGLGWIPNLTEPDHSLILPVAFGFINLTIIEIQRLSKLRQPSKMHNVFTNV 224
+ +L+ GG+ W P+LT PD + ILP++ G INL I+EI L K+ S+ T
Sbjct: 202 SVQ-EQLATGGILWFPDLTAPDSTWILPISVGVINLLIVEICALQKIGM-SRFQTYITYF 259
Query: 223 FRVFSIIMIPVAASVPSCMCLYWTTSSSIGLMHNLILLSPTLRRKLKIPEAPSEIDRPYQ 44
R S++MIP+AA+VPS + LYW SS +GL NL+L SP R+ +IP S+ + PY+
Sbjct: 260 VRAMSVLMIPIAATVPSSIVLYWLCSSFVGLSQNLLLRSPGFRQLCRIPSTKSDSETPYK 319
Query: 43 HI 38
I
Sbjct: 320 DI 321
>AM055750-1|CAJ20055.1| 253|Homo sapiens Cox18Hs1 protein protein.
Length = 253
Score = 155 bits (376), Expect = 1e-37
Identities = 75/182 (41%), Positives = 113/182 (62%)
Frame = -2
Query: 583 KQCAILYKRSLKKQWVNLIERDNCHPFKASLVILIQIPIWVCMSFALRNLVYLQSGDPSL 404
+ + Y +++++ L RDNCHPFKA++++ IQ+P+W+ MSFALRNL +
Sbjct: 62 RDARLTYLKNMRRLISELYVRDNCHPFKATVLVWIQLPMWIFMSFALRNLSTGAAHSEGF 121
Query: 403 LITFMELSAGGLGWIPNLTEPDHSLILPVAFGFINLTIIEIQRLSKLRQPSKMHNVFTNV 224
+ +L+ GG+ W P+LT PD + ILP++ G INL I+EI L K+ S+ T
Sbjct: 122 SVQ-EQLATGGILWFPDLTAPDSTWILPISVGVINLLIVEICALQKIGM-SRFQTYITYF 179
Query: 223 FRVFSIIMIPVAASVPSCMCLYWTTSSSIGLMHNLILLSPTLRRKLKIPEAPSEIDRPYQ 44
R S++MIP+AA+VPS + LYW SS +GL NL+L SP R+ +IP S+ + PY+
Sbjct: 180 VRAMSVLMIPIAATVPSSIVLYWLCSSFVGLSQNLLLRSPGFRQLCRIPSTRSDSETPYK 239
Query: 43 HI 38
I
Sbjct: 240 DI 241
>X80695-1|CAA56712.1| 435|Homo sapiens OXA1Hs protein.
Length = 435
Score = 58.4 bits (135), Expect = 2e-08
Identities = 42/144 (29%), Positives = 70/144 (48%)
Frame = -2
Query: 505 FKASLVILIQIPIWVCMSFALRNLVYLQSGDPSLLITFMELSAGGLGWIPNLTEPDHSLI 326
+K ++ + Q PI++ ALR + L PSL GGL W +LT D I
Sbjct: 214 YKPLILPVTQAPIFISFFIALREMANLPV--PSL-------QTGGLWWFQDLTVSDPIYI 264
Query: 325 LPVAFGFINLTIIEIQRLSKLRQPSKMHNVFTNVFRVFSIIMIPVAASVPSCMCLYWTTS 146
LP+A ++E+ + + Q S + + NV R+ +I +P+ P+ + +YW +S
Sbjct: 265 LPLAVTATMWAVLELGAETGV-QSSDLQWM-RNVIRMMPLITLPITMHFPTAVFMYWLSS 322
Query: 145 SSIGLMHNLILLSPTLRRKLKIPE 74
+ L+ L P +R LKIP+
Sbjct: 323 NLFSLVQVSCLRIPAVRTVLKIPQ 346
>BC112331-1|AAI12332.1| 496|Homo sapiens oxidase (cytochrome c)
assembly 1-like protein.
Length = 496
Score = 58.4 bits (135), Expect = 2e-08
Identities = 42/144 (29%), Positives = 70/144 (48%)
Frame = -2
Query: 505 FKASLVILIQIPIWVCMSFALRNLVYLQSGDPSLLITFMELSAGGLGWIPNLTEPDHSLI 326
+K ++ + Q PI++ ALR + L PSL GGL W +LT D I
Sbjct: 274 YKPLILPVTQAPIFISFFIALREMANLPV--PSL-------QTGGLWWFQDLTVSDPIYI 324
Query: 325 LPVAFGFINLTIIEIQRLSKLRQPSKMHNVFTNVFRVFSIIMIPVAASVPSCMCLYWTTS 146
LP+A ++E+ + + Q S + + NV R+ +I +P+ P+ + +YW +S
Sbjct: 325 LPLAVTATMWAVLELGAETGV-QSSDLQWM-RNVIRMMPLITLPITMHFPTAVFMYWLSS 382
Query: 145 SSIGLMHNLILLSPTLRRKLKIPE 74
+ L+ L P +R LKIP+
Sbjct: 383 NLFSLVQVSCLRIPAVRTVLKIPQ 406
>BC001669-1|AAH01669.2| 437|Homo sapiens OXA1L protein protein.
Length = 437
Score = 58.4 bits (135), Expect = 2e-08
Identities = 42/144 (29%), Positives = 70/144 (48%)
Frame = -2
Query: 505 FKASLVILIQIPIWVCMSFALRNLVYLQSGDPSLLITFMELSAGGLGWIPNLTEPDHSLI 326
+K ++ + Q PI++ ALR + L PSL GGL W +LT D I
Sbjct: 216 YKPLILPVTQAPIFISFFIALREMANLPV--PSL-------QTGGLWWFQDLTVSDPIYI 266
Query: 325 LPVAFGFINLTIIEIQRLSKLRQPSKMHNVFTNVFRVFSIIMIPVAASVPSCMCLYWTTS 146
LP+A ++E+ + + Q S + + NV R+ +I +P+ P+ + +YW +S
Sbjct: 267 LPLAVTATMWAVLELGAETGV-QSSDLQWM-RNVIRMMPLITLPITMHFPTAVFMYWLSS 324
Query: 145 SSIGLMHNLILLSPTLRRKLKIPE 74
+ L+ L P +R LKIP+
Sbjct: 325 NLFSLVQVSCLRIPAVRTVLKIPQ 348
>AJ001981-1|CAA05127.1| 495|Homo sapiens OXA1L protein.
Length = 495
Score = 58.4 bits (135), Expect = 2e-08
Identities = 42/144 (29%), Positives = 70/144 (48%)
Frame = -2
Query: 505 FKASLVILIQIPIWVCMSFALRNLVYLQSGDPSLLITFMELSAGGLGWIPNLTEPDHSLI 326
+K ++ + Q PI++ ALR + L PSL GGL W +LT D I
Sbjct: 274 YKPLILPVTQAPIFISFFIALREMANLPV--PSL-------QTGGLWWFQDLTVSDPIYI 324
Query: 325 LPVAFGFINLTIIEIQRLSKLRQPSKMHNVFTNVFRVFSIIMIPVAASVPSCMCLYWTTS 146
LP+A ++E+ + + Q S + + NV R+ +I +P+ P+ + +YW +S
Sbjct: 325 LPLAVTATMWAVLELGAETGV-QSSDLQWM-RNVIRMMPLITLPITMHFPTAVFMYWLSS 382
Query: 145 SSIGLMHNLILLSPTLRRKLKIPE 74
+ L+ L P +R LKIP+
Sbjct: 383 NLFSLVQVSCLRIPAVRTVLKIPQ 406
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,478,514
Number of Sequences: 237096
Number of extensions: 1826956
Number of successful extensions: 3133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3119
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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