Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14d15
(584 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY069618-1|AAL39763.1| 351|Drosophila melanogaster LD38503p pro... 214 8e-56
AE014296-1579|AAF50323.1| 351|Drosophila melanogaster CG4942-PA... 214 8e-56
AF145596-1|AAD38571.1| 441|Drosophila melanogaster BcDNA.GH0222... 50 2e-06
AE014296-1858|AAN11911.1| 441|Drosophila melanogaster CG6404-PB... 50 2e-06
AE014296-1857|AAF50127.2| 441|Drosophila melanogaster CG6404-PA... 50 2e-06
>AY069618-1|AAL39763.1| 351|Drosophila melanogaster LD38503p
protein.
Length = 351
Score = 214 bits (522), Expect = 8e-56
Identities = 97/193 (50%), Positives = 134/193 (69%), Gaps = 2/193 (1%)
Frame = -2
Query: 583 KQCAILYKRSLKKQWVNLIERDNCHPFKASLVILIQIPIWVCMSFALRNLVYLQSGDPSL 404
KQ I+Y+RS+KKQW NLI RDNCHP K +V+ QIP+W+ S ALRNLVY+ S+
Sbjct: 146 KQTQIVYRRSIKKQWQNLIVRDNCHPMKTMIVLWGQIPLWIFQSVALRNLVYMLPDPTSI 205
Query: 403 L--ITFMELSAGGLGWIPNLTEPDHSLILPVAFGFINLTIIEIQRLSKLRQPSKMHNVFT 230
I E++ GG GWIPNLT D+S ILPVA G INL IIE+Q +S+ R +++ N+
Sbjct: 206 QAQIVTTEMTIGGFGWIPNLTVVDNSYILPVALGLINLAIIEVQAMSRTRPSTRLQNIAN 265
Query: 229 NVFRVFSIIMIPVAASVPSCMCLYWTTSSSIGLMHNLILLSPTLRRKLKIPEAPSEIDRP 50
NVFR S++M+PVA +VPS +C+YW SSS GL NL++LSP +RR + IP+ +E+ P
Sbjct: 266 NVFRGLSVVMVPVACTVPSALCVYWVASSSFGLAQNLLILSPEVRRSVGIPKTQTELSEP 325
Query: 49 YQHIKEELQQTIK 11
Y + ++QQ ++
Sbjct: 326 YDLLWLKIQQRLR 338
>AE014296-1579|AAF50323.1| 351|Drosophila melanogaster CG4942-PA
protein.
Length = 351
Score = 214 bits (522), Expect = 8e-56
Identities = 97/193 (50%), Positives = 134/193 (69%), Gaps = 2/193 (1%)
Frame = -2
Query: 583 KQCAILYKRSLKKQWVNLIERDNCHPFKASLVILIQIPIWVCMSFALRNLVYLQSGDPSL 404
KQ I+Y+RS+KKQW NLI RDNCHP K +V+ QIP+W+ S ALRNLVY+ S+
Sbjct: 146 KQTQIVYRRSIKKQWQNLIVRDNCHPMKTMIVLWGQIPLWIFQSVALRNLVYMLPDPTSI 205
Query: 403 L--ITFMELSAGGLGWIPNLTEPDHSLILPVAFGFINLTIIEIQRLSKLRQPSKMHNVFT 230
I E++ GG GWIPNLT D+S ILPVA G INL IIE+Q +S+ R +++ N+
Sbjct: 206 QAQIVTTEMTIGGFGWIPNLTVVDNSYILPVALGLINLAIIEVQAMSRTRPSTRLQNIAN 265
Query: 229 NVFRVFSIIMIPVAASVPSCMCLYWTTSSSIGLMHNLILLSPTLRRKLKIPEAPSEIDRP 50
NVFR S++M+PVA +VPS +C+YW SSS GL NL++LSP +RR + IP+ +E+ P
Sbjct: 266 NVFRGLSVVMVPVACTVPSALCVYWVASSSFGLAQNLLILSPEVRRSVGIPKTQTELSEP 325
Query: 49 YQHIKEELQQTIK 11
Y + ++QQ ++
Sbjct: 326 YDLLWLKIQQRLR 338
>AF145596-1|AAD38571.1| 441|Drosophila melanogaster BcDNA.GH02220
protein.
Length = 441
Score = 50.0 bits (114), Expect = 2e-06
Identities = 39/144 (27%), Positives = 60/144 (41%)
Frame = -2
Query: 511 HPFKASLVILIQIPIWVCMSFALRNLVYLQSGDPSLLITFMELSAGGLGWIPNLTEPDHS 332
+P K +V L Q P+++ LR + + P + GGL W +LT D
Sbjct: 224 NPLKNMVVPLAQAPLFISFFMGLRQM----ANAP-----VESMRDGGLFWFTDLTMADPF 274
Query: 331 LILPVAFGFINLTIIEIQRLSKLRQPSKMHNVFTNVFRVFSIIMIPVAASVPSCMCLYWT 152
+LP+ IEI S + M N V R I++ P + P+ + YW
Sbjct: 275 YLLPLITSATLYLTIEIGTDSARLSAANM-NTMKYVLRALPIVIFPFTMNFPAAILTYWA 333
Query: 151 TSSSIGLMHNLILLSPTLRRKLKI 80
S+ I L +L P++R KI
Sbjct: 334 CSNFISLGQVAVLRIPSVREYFKI 357
>AE014296-1858|AAN11911.1| 441|Drosophila melanogaster CG6404-PB,
isoform B protein.
Length = 441
Score = 50.0 bits (114), Expect = 2e-06
Identities = 39/144 (27%), Positives = 60/144 (41%)
Frame = -2
Query: 511 HPFKASLVILIQIPIWVCMSFALRNLVYLQSGDPSLLITFMELSAGGLGWIPNLTEPDHS 332
+P K +V L Q P+++ LR + + P + GGL W +LT D
Sbjct: 224 NPLKNMVVPLAQAPLFISFFMGLRQM----ANAP-----VESMRDGGLFWFTDLTMADPF 274
Query: 331 LILPVAFGFINLTIIEIQRLSKLRQPSKMHNVFTNVFRVFSIIMIPVAASVPSCMCLYWT 152
+LP+ IEI S + M N V R I++ P + P+ + YW
Sbjct: 275 YLLPLITSATLYLTIEIGTDSARLSAANM-NTMKYVLRALPIVIFPFTMNFPAAILTYWA 333
Query: 151 TSSSIGLMHNLILLSPTLRRKLKI 80
S+ I L +L P++R KI
Sbjct: 334 CSNFISLGQVAVLRIPSVREYFKI 357
>AE014296-1857|AAF50127.2| 441|Drosophila melanogaster CG6404-PA,
isoform A protein.
Length = 441
Score = 50.0 bits (114), Expect = 2e-06
Identities = 39/144 (27%), Positives = 60/144 (41%)
Frame = -2
Query: 511 HPFKASLVILIQIPIWVCMSFALRNLVYLQSGDPSLLITFMELSAGGLGWIPNLTEPDHS 332
+P K +V L Q P+++ LR + + P + GGL W +LT D
Sbjct: 224 NPLKNMVVPLAQAPLFISFFMGLRQM----ANAP-----VESMRDGGLFWFTDLTMADPF 274
Query: 331 LILPVAFGFINLTIIEIQRLSKLRQPSKMHNVFTNVFRVFSIIMIPVAASVPSCMCLYWT 152
+LP+ IEI S + M N V R I++ P + P+ + YW
Sbjct: 275 YLLPLITSATLYLTIEIGTDSARLSAANM-NTMKYVLRALPIVIFPFTMNFPAAILTYWA 333
Query: 151 TSSSIGLMHNLILLSPTLRRKLKI 80
S+ I L +L P++R KI
Sbjct: 334 CSNFISLGQVAVLRIPSVREYFKI 357
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,889,877
Number of Sequences: 53049
Number of extensions: 530529
Number of successful extensions: 1150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2338128087
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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