Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14d15
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024827-3|AAF60807.2|  317|Caenorhabditis elegans Hypothetical ...    65   3e-11
Z81029-7|CAB02698.2|  366|Caenorhabditis elegans Hypothetical pr...    38   0.005
Z81109-12|CAE17917.2|  364|Caenorhabditis elegans Hypothetical p...    32   0.26 
AF000191-4|AAB52881.2|  362|Caenorhabditis elegans Hypothetical ...    30   1.4  
U23528-2|AAK31387.1|  984|Caenorhabditis elegans Calsyntenin/alc...    29   3.2  
AY091591-1|AAM00045.1|  984|Caenorhabditis elegans calsyntenin p...    29   3.2  
AL033514-12|CAA22099.1|  208|Caenorhabditis elegans Hypothetical...    29   3.2  
Z81571-1|CAB04610.1|  341|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AF022980-2|AAG24188.3|  343|Caenorhabditis elegans Hypothetical ...    28   4.2  
AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched rela...    28   5.6  
AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z70781-1|CAA94835.1|  358|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U64849-3|AAC48050.2|  351|Caenorhabditis elegans Twik family of ...    27   7.4  
AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical...    27   7.4  
AC006830-8|ABA00186.1|  289|Caenorhabditis elegans Hypothetical ...    27   7.4  

>AC024827-3|AAF60807.2|  317|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.1 protein.
          Length = 317

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 3/149 (2%)
 Frame = -2

Query: 475 IPIWVCMSFALRNLVYLQSGDPSLLITFMELSAGGLGWIPNLTEPDHSLILPVA---FGF 305
           +P+W+  SFALRN++      PS+        AG L WIP++  PD   ILPVA   FGF
Sbjct: 174 VPVWIFSSFALRNVIN-SDFHPSV--------AGHL-WIPDMLAPDPYFILPVAVGVFGF 223

Query: 304 INLTIIEIQRLSKLRQPSKMHNVFTNVFRVFSIIMIPVAASVPSCMCLYWTTSSSIGLMH 125
           +NL          ++   K  + +  V   F++  + + A +P+C+ LYW   S+ G+  
Sbjct: 224 LNLYSQRKIYPGVVKMTWKQKS-YDGVLAFFTMFAVTIMAQLPACIPLYWLIVSTTGMAQ 282

Query: 124 NLILLSPTLRRKLKIPEAPSEIDRPYQHI 38
             +L  P ++    I + P++   P + +
Sbjct: 283 AQMLRHPKIKGIFGIKKLPTDSATPIRDL 311


>Z81029-7|CAB02698.2|  366|Caenorhabditis elegans Hypothetical
           protein C01A2.3 protein.
          Length = 366

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
 Frame = -2

Query: 406 LLITFMELSAGGLGWIPNLTEPDHSLILPV--AFGFINLTIIEIQRLSKLRQPSKMHNVF 233
           +++ +  LS GG  W  +LT  D    LP   A     +T + I+  +   Q   +   F
Sbjct: 204 VVVNYPGLSTGGTLWFTDLTATDPYYALPFISAATMALVTKVGIEMGTSADQMPPIMRAF 263

Query: 232 TNVFRVFSIIMIPVAASVPSCMCLYWTTSSSIGLMHNLILLSPTLRRKLKIP 77
                   +++  V++   + +C+YWT S+++ L++        +R+   IP
Sbjct: 264 MTYG--LPVVIFGVSSQFATGLCVYWTASNAVSLIYAAAFKVDAIRKIFGIP 313


>Z81109-12|CAE17917.2|  364|Caenorhabditis elegans Hypothetical
           protein R10D12.17 protein.
          Length = 364

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -2

Query: 478 QIPIWVCMSFALRNLVYLQSGDPSLLITFMELSAGGLGWI 359
           ++ IW+C+ FAL  ++ LQ  + +    F  LSA G GWI
Sbjct: 100 RLSIWLCVLFALVRVIVLQKINDN---RFQILSAPGFGWI 136


>AF000191-4|AAB52881.2|  362|Caenorhabditis elegans Hypothetical
           protein T23C6.5 protein.
          Length = 362

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 20  LLKFFFYMLIRSVYFTWCFWYF*LSPQC 103
           ++ F F+ L R VYF W  W   ++P+C
Sbjct: 258 VVAFAFFSLPRYVYFMWTVWRDPMAPRC 285


>U23528-2|AAK31387.1|  984|Caenorhabditis elegans
           Calsyntenin/alcadein homolog protein1, isoform a
           protein.
          Length = 984

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 425 QVHQVSQCKRHADPYRDLDQYY 490
           Q H++  CK H  P RD+D  Y
Sbjct: 666 QSHKIDYCKMHLQPARDMDVEY 687


>AY091591-1|AAM00045.1|  984|Caenorhabditis elegans calsyntenin
           protein.
          Length = 984

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 425 QVHQVSQCKRHADPYRDLDQYY 490
           Q H++  CK H  P RD+D  Y
Sbjct: 666 QSHKIDYCKMHLQPARDMDVEY 687


>AL033514-12|CAA22099.1|  208|Caenorhabditis elegans Hypothetical
           protein Y75B8A.11 protein.
          Length = 208

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = -2

Query: 331 LILPVAFGFINLTIIEIQRLSKLRQPSKMHNV-FTNVFRVFSIIMIPVAASVPSCMCLYW 155
           + LPV  GF+      I++ SK + P+   NV F+  FR F  + +P   S  + +    
Sbjct: 75  ICLPVDAGFLGEVNGSIKQNSKTKCPAFFKNVSFSLFFRAF-YLTVPACTSKKNVLLTST 133

Query: 154 TTSSSIGLMHNLILLSPTLRRK 89
           T++ +   +     LSP  +R+
Sbjct: 134 TSTINHQKLEPATTLSPIRQRR 155


>Z81571-1|CAB04610.1|  341|Caenorhabditis elegans Hypothetical
           protein M01G12.1 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 319 VAFGFINLTIIEIQRLSKLRQPSKMHNVFTNVFRVFSIIMIP-VAASVPSCMCLYWTTSS 143
           +  G   L I++  R S  RQ  + H     +FR+   I++P V   VP C+C++     
Sbjct: 215 IFLGVQTLLILQQHRKSMSRQTYQAHK--NALFRLVMQIVLPGVFIVVPLCICMFVVVQG 272

Query: 142 SIGL 131
            + L
Sbjct: 273 DVHL 276


>AF022980-2|AAG24188.3|  343|Caenorhabditis elegans Hypothetical
           protein T03D3.5 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 303 IKPKATGNIKE*SGS-VKFGIQPSPPADNSINVINRDGSP 419
           I+PK TG+ K   GS  K  +  SP  +N+I   + D SP
Sbjct: 224 IRPKKTGHRKRIGGSKEKDDVPASPALNNNIETKSEDPSP 263


>AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched related
           family protein 15 protein.
          Length = 840

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = -2

Query: 274 LSKLRQPSKMHNVFTNVFRVFSIIMIPVAASVPSCMCLYWTTSSSIGLMHNLILLS 107
           LS L+   + ++ +T  F   +I+++ +  +V SCM   W TS  I  M  +++ S
Sbjct: 248 LSILKDEMQKNSTYTMPFISLTILLL-LCFTVASCMTDNWVTSKPIEAMIGILVSS 302


>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +3

Query: 273 NLCISIIVKLIKPK-ATGNIKE*SGSVKFGIQPSPPADNSINVINRDGSPLCRYTKFL-N 446
           +L +S+ + LI P  +T  ++     V F ++      NSI+++N+    + +Y KF  N
Sbjct: 2   HLFLSVFLLLILPLISTSAVENNQNIVDFSVKDFNKNINSIDILNKKWDIVSKYVKFNGN 61

Query: 447 AKDMQTHIGIWINITKLALK 506
           +  +   + +   I K+  K
Sbjct: 62  SSKLNGRLRLSEKIDKIIFK 81


>Z70781-1|CAA94835.1|  358|Caenorhabditis elegans Hypothetical
           protein F57A8.3 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/40 (42%), Positives = 18/40 (45%)
 Frame = -1

Query: 488 NIDPNPYMGLHVFCIEKLGVPAKWRSISVDHIYGVVSWWT 369
           NI  NPY+G  V C   L  P         H YG V WWT
Sbjct: 179 NISGNPYVG--VICYYILTTPL--------HNYGDVDWWT 208


>U64849-3|AAC48050.2|  351|Caenorhabditis elegans Twik family of
           potassium channelsprotein 10 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
 Frame = -2

Query: 562 KRSLKKQWVNLIERDNCHPFKASLVILIQIPIWVCMSFALRNLVYLQSGDPSLLITFMEL 383
           +R + +    LI+  + H FK      +   ++ C+ ++  N   L + D SLL T   +
Sbjct: 118 ERRVNESISRLIDDYSKHMFKL-FTNPVAANMFDCLFYSQSNYTPLWTTDSSLLFTATTI 176

Query: 382 SAGGLGWIPNLTEPDH-SLILPVAFGFINLTIIEIQRLSK 266
              G G+I  LT      L +  AFG I L ++ +  + K
Sbjct: 177 IPVGYGYIAPLTSTGRIVLCIYAAFG-IPLALVMMSDVGK 215


>AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.14 protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 134 IDA*F--NPSFTNTEEKVKNTRSTK*NRQTLSTYKRRTSTNNKK 9
           +DA F  +PS    +E  KNT STK   +T    K+ T  N KK
Sbjct: 513 LDASFIVDPSTITEDEPTKNTPSTK-GTETTEDTKKPTGGNKKK 555


>AC006830-8|ABA00186.1|  289|Caenorhabditis elegans Hypothetical
           protein ZK105.8 protein.
          Length = 289

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -2

Query: 577 CAILYKRSLKKQWVNLIERDNC-HPFKASLV--ILIQIPIWVCMSFALRNL 434
           C++L     K Q V +I++     P K  L+   L   PI VC+SFAL NL
Sbjct: 86  CSLLCSFMRKHQSVAMIDQKRIMDPVKKYLIKGFLHIPPILVCVSFALSNL 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,252,112
Number of Sequences: 27780
Number of extensions: 284742
Number of successful extensions: 847
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)