Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14d15
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.72 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.7  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -2

Query: 301 NLTIIEIQRLSKLRQPSKMHNVFTNVFRVFSIIMIPVAASVPSCMCLYWTTSSS 140
           N TI++I +L   R  +K++    N     +  + PVA ++P    +   +S+S
Sbjct: 512 NNTIVDISKLVNKRNNAKIYTSSVNSNLTVNQTVNPVAINIPGDTSIIVDSSTS 565


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 362 PTKSTS*QLHKCDQQRWISTLQVHQVSQCKRHAD 463
           P++++S     CD+ R     Q  QV + +RH+D
Sbjct: 320 PSQASSCSCLDCDEIRESLDTQFLQVCRSRRHSD 353


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 249 LEGCLSLDNLCISIIVKLIK 308
           LE  L   N+CI+I  KL+K
Sbjct: 300 LEELLGKRNICIAIKEKLVK 319


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -2

Query: 145 SSIGLMHNLILLS----PTLRRKLKIPEAPSEIDRPYQHIKEELQ 23
           S++G ++N +  S    P     L   +  S +D P  HIK+E Q
Sbjct: 624 SNMGFLNNSMCTSTTTSPDKEHVLAHNDLMSPLDEPAVHIKQEGQ 668


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,250
Number of Sequences: 438
Number of extensions: 3923
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)