Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14d13
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    28   1.3  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   3.0  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   9.3  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    25   9.3  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 485 VMESEMMPSG-DGQTMVKDWWCKSRNGFPQRLMLPLGTI 372
           ++  E + SG D +T+  ++WCK R+ F +     LGT+
Sbjct: 283 IIAEESLDSGSDTETLYLNYWCKIRHFFREGFAEFLGTL 321


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = -1

Query: 471 NDAFRRWPDNGQGLVVQVSQR---IPSETYAAPRYDWRFGDADVRHRVAG 331
           N + R W +  Q L    S R   I S  +  PRY W +G   +  R +G
Sbjct: 100 NGSIREWVEIPQHLDYSFSVRLCSIYSIIFRPPRYGWNYGSIVINLRDSG 149


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -1

Query: 147 RHVEHQQDRGHLGDGHDEGRSHLPGSRTCWSRRDLQ--RRHDDEQ 19
           R  E +++RG  G G ++ R H    R    RRD    RRH + +
Sbjct: 22  RDEEPRRERGSGGIGREDPRGHYGSERPRRRRRDESDFRRHRESR 66


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 441 GQGLVVQVSQRIPSETYAAPRYDWRFGDADVRHRVAGPHRYAL 313
           G+ LVV   + +   + A P + W   D  + H V  P  + L
Sbjct: 227 GRSLVVCGEEGLDEISPAGPTHTWLVRDGTITHEVYTPESFHL 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,526
Number of Sequences: 5004
Number of extensions: 55436
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)