Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14d13
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0583 - 26375850-26375971,26376070-26376139,26376227-263763... 29 2.4
02_02_0712 + 13200174-13200761,13201966-13202616 29 2.4
03_03_0094 + 14378953-14380728 29 3.1
01_06_1275 - 35910992-35911342,35912157-35912390,35912573-359126... 29 4.1
01_06_0812 + 32161218-32161540,32161732-32161843,32162017-321621... 29 4.1
05_01_0048 + 331155-333077,333208-333354,333540-334087,334481-33... 28 5.5
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117... 28 5.5
01_06_0848 + 32426550-32426613,32427013-32427167,32428470-324285... 28 5.5
11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568 27 9.6
03_05_0314 - 23035295-23036342,23036552-23036616 27 9.6
01_06_0622 + 30669015-30669279,30669467-30670419 27 9.6
>04_04_0583 -
26375850-26375971,26376070-26376139,26376227-26376309,
26376452-26376629,26377390-26377851
Length = 304
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 321 TGADRRHDDVHLHLQTSNRTEG-QHKSLRESVARLAPPVLDHCLAISGRHHFA 476
T A ++ D+HLH+ TS T G + + LR R PV D L+ S R + A
Sbjct: 180 TVAVTQYGDLHLHVATSLVTVGSEFRKLRILGVRATAPVGDQNLSASTRTNMA 232
>02_02_0712 + 13200174-13200761,13201966-13202616
Length = 412
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 153 FSVDHYVSELHVVSEEARHVNRSVKWISERHGG 251
++ +HY+ + +R NRSV W+ HGG
Sbjct: 317 YADEHYLPTFLGIRHPSRVTNRSVTWVDWSHGG 349
>03_03_0094 + 14378953-14380728
Length = 591
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = -2
Query: 512 IPEYLSTRRVMESEMMPSGDGQTMVKDWWCKSRNGFPQRLMLPLGTIGGLEMQMYVIVSP 333
+ L R + ES+++ + + W + + L + LG + G+ M +
Sbjct: 208 VKRQLRVRTIYESKLLEHDADRHLAVFWISCEAGTYVRTLCVHLGLLLGVGAHMQEL-RR 266
Query: 332 VRTGMLLPTLDMTMMKDRCACRWS 261
VR+G+L T +M M D RW+
Sbjct: 267 VRSGILGETDNMVTMHDVMDARWA 290
>01_06_1275 -
35910992-35911342,35912157-35912390,35912573-35912653,
35913162-35913407,35913502-35913617,35914813-35915032
Length = 415
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 409 PLRDLHHQSLTIVWPSPEGIISLSITRRVERYSGIN 516
P R LHH L ++ PE +++ ++VE G N
Sbjct: 61 PPRGLHHHCLGVLSQGPEDVVAEYYQQQVEMLEGFN 96
>01_06_0812 +
32161218-32161540,32161732-32161843,32162017-32162176,
32162589-32162737,32162832-32162983,32163744-32163858,
32163956-32164093
Length = 382
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +3
Query: 36 VFVSPSLTSMSEIQVGEIVLHHDHLRGVHGLAGVRHAEVFSVDHYVSELHVVSEEARHVN 215
V PSLT+ + + IVL G+ +A V + ++DHY+ ++ + EE +N
Sbjct: 202 VVEKPSLTTWMKGGLDYIVLKSLDTDGIRIIASVLGQSI-ALDHYIRQVDDMVEEFTEIN 260
Query: 216 R 218
R
Sbjct: 261 R 261
>05_01_0048 +
331155-333077,333208-333354,333540-334087,334481-334616
Length = 917
Score = 28.3 bits (60), Expect = 5.5
Identities = 27/98 (27%), Positives = 31/98 (31%), Gaps = 3/98 (3%)
Frame = +3
Query: 264 PATSTTVLHHGHVQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKSLRESVARLAPPVLDH 443
P S VL HV CG H R+ DV + S G H + +SV L
Sbjct: 70 PLESRLVLDVYHVDCGVRHAALVTRNGDVFTWGEDSGGRLG-HGTREDSVHPRLVESLAA 128
Query: 444 C---LAISGRHHFAFHYTTSRKVLWDKSLHIHGATDDG 548
C G H TT W H G G
Sbjct: 129 CNVDFVACGEFHTCAVTTTGELYTWGDGTHNVGLLGHG 166
>03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,
1178179-1178378,1178505-1178605,1178747-1179369,
1179451-1179546,1179637-1179798,1179889-1180068,
1180173-1180323,1180408-1180641,1180753-1180913,
1181041-1181163,1181261-1181421,1181655-1181877,
1181952-1182346,1182461-1182671,1183536-1184522
Length = 1883
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 129 QDRGHLGDGHDEGRSHLPGSRTCWSRRDL 43
+DRGH D ++G+ + S CW+ +DL
Sbjct: 1159 RDRGHFSDYQNQGKLFMADS--CWNAKDL 1185
>01_06_0848 +
32426550-32426613,32427013-32427167,32428470-32428526,
32428877-32428930,32429349-32429418,32429951-32432034
Length = 827
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 396 SLRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKS 518
S + + + VLD + HH A YT S + LW S
Sbjct: 693 SAGDGASLIIKSVLDRATELLTDHHAAASYTVSNRTLWQAS 733
>11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568
Length = 605
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 220 LSNGYPRGMVEIHELQRQAQRSFIMVMSNVG 312
++ G RG ++ LQ A RSF++ + NVG
Sbjct: 266 INGGGKRGTIQAGALQAGAVRSFLVYVDNVG 296
>03_05_0314 - 23035295-23036342,23036552-23036616
Length = 370
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 399 LRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKSLHIHGATD 542
+RE + + P+ H +A+SG S KV+WD +++ TD
Sbjct: 6 IRELRSLMTTPLHLHLIALSGSEFNHVDGIESAKVIWDTLRNMYEGTD 53
>01_06_0622 + 30669015-30669279,30669467-30670419
Length = 405
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +1
Query: 178 NFMLLVKKLAMSIGLSNGYPRGMVEIHELQRQAQ 279
N + LV+++ +++G+ GY +G+V E+Q +A+
Sbjct: 327 NKVFLVEEMRLAVGVE-GYDKGIVTAEEIQEKAR 359
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,344,922
Number of Sequences: 37544
Number of extensions: 431817
Number of successful extensions: 1338
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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