Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14d13
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58762-6|AAG01563.2| 208|Caenorhabditis elegans Hypothetical pr... 30 1.6
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 30 1.6
AC006733-8|AAF60490.1| 600|Caenorhabditis elegans Hypothetical ... 30 1.6
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 29 3.7
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 29 3.7
U23169-3|AAV58882.1| 284|Caenorhabditis elegans Regulator of g ... 28 4.9
U23169-2|AAM98050.1| 290|Caenorhabditis elegans Regulator of g ... 28 4.9
U23169-1|AAL02450.1| 363|Caenorhabditis elegans Regulator of g ... 28 4.9
Z46937-5|CAA87057.1| 376|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z46937-2|CAB60996.1| 444|Caenorhabditis elegans Hypothetical pr... 28 6.5
U27124-1|AAA73482.1| 376|Caenorhabditis elegans MPK-1 protein. 28 6.5
U03879-1|AAA18956.1| 444|Caenorhabditis elegans Sur-1 MAP kinas... 28 6.5
U50312-10|AAY86208.1| 356|Caenorhabditis elegans Hypothetical p... 27 8.6
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 27 8.6
>U58762-6|AAG01563.2| 208|Caenorhabditis elegans Hypothetical
protein T27F7.1 protein.
Length = 208
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 554 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMPSGDGQTMVKD 432
K+T V SM +PE + T R M +EMM G + M+++
Sbjct: 104 KSTEVMKSMQQLVKVPEIMKTMREMSAEMMKLGIIEEMIEE 144
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.9 bits (64), Expect = 1.6
Identities = 30/114 (26%), Positives = 34/114 (29%), Gaps = 2/114 (1%)
Frame = +3
Query: 57 TSMSEIQVGEIVLHHDHLRGVHGLAGVRHA--EVFSVDHYVSELHVVSEEARHVNRSVKW 230
T S GE HH H G H A H E H+ H E H
Sbjct: 412 THHSPAHHGEHGTHHGH-HGEHHHAPAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGH 470
Query: 231 ISERHGGDT*APATSTTVLHHGHVQCGQEHTGADRRHDDVHLHLQTSNRTEGQH 392
E H HHGH G H+ A H H H + G+H
Sbjct: 471 HGEHHHAPAHHGHHGEHGTHHGHH--GSHHSPAHHGHHGEHHHAPAHHGHHGEH 522
Score = 29.1 bits (62), Expect = 2.8
Identities = 28/104 (26%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Frame = +3
Query: 96 HHDHLRGVHGLAGVRHAEVFSVDHYVSELHVVSEEARHVNRSVKWISERHGGDT*-APAT 272
HH H G HG H S H+ A H + H G+ APA
Sbjct: 480 HHGH-HGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAH 538
Query: 273 STTVLHHG--HVQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKS 398
HG H G H+ A H H H + G H S
Sbjct: 539 HGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHHGS 582
Score = 29.1 bits (62), Expect = 2.8
Identities = 28/106 (26%), Positives = 35/106 (33%)
Frame = -1
Query: 399 ETYAAPRYDWRFGDADVRHRVAGPHRYALAHIGHDHDEGPLCLSLELMYLHHASRISI*Q 220
E + AP + G+ H G H +A AH GH + G + HH S S
Sbjct: 508 EHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHG-------THHGHHGSHHSPAH 560
Query: 219 TD*HGELLH*QHEVR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSH 82
HGE H H H + GH GH H
Sbjct: 561 HGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGH---GHHAPAHH 603
>AC006733-8|AAF60490.1| 600|Caenorhabditis elegans Hypothetical
protein Y32H12A.7 protein.
Length = 600
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 245 WWRYMSSSDKHNGPSSWSCPMWARAYR 325
WWRY+ S +H+GP+ WA R
Sbjct: 120 WWRYLLWSLQHSGPTFIKLGQWASTRR 146
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 153 RPRHVEHQQDRGHLGDGHDEGRSHLPGSRTCWSRRDLQRRHDDEQHD 13
R H ++ Q R + +GH + S + WS D Q R +QH+
Sbjct: 512 RQNHYQNGQQRENGENGHHNHYQNGQSSNSWWSGNDGQTRQRKQQHN 558
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 153 RPRHVEHQQDRGHLGDGHDEGRSHLPGSRTCWSRRDLQRRHDDEQHD 13
R H ++ Q R + +GH + S + WS D Q R +QH+
Sbjct: 414 RQNHYQNGQQRENGENGHHNHYQNGQSSNSWWSGNDGQTRQRKQQHN 460
>U23169-3|AAV58882.1| 284|Caenorhabditis elegans Regulator of g
protein signalingprotein 3, isoform c protein.
Length = 284
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 554 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMP 462
+N + ++DM+ F P RR++E++ P
Sbjct: 104 RNAVASETLDMEEFAPAIKEVRRLLENDQFP 134
>U23169-2|AAM98050.1| 290|Caenorhabditis elegans Regulator of g
protein signalingprotein 3, isoform b protein.
Length = 290
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 554 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMP 462
+N + ++DM+ F P RR++E++ P
Sbjct: 110 RNAVASETLDMEEFAPAIKEVRRLLENDQFP 140
>U23169-1|AAL02450.1| 363|Caenorhabditis elegans Regulator of g
protein signalingprotein 3, isoform a protein.
Length = 363
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 554 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMP 462
+N + ++DM+ F P RR++E++ P
Sbjct: 183 RNAVASETLDMEEFAPAIKEVRRLLENDQFP 213
>Z46937-5|CAA87057.1| 376|Caenorhabditis elegans Hypothetical
protein F43C1.2a protein.
Length = 376
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 527 DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW 426
D GF+ EY++TR E+M + G T D W
Sbjct: 182 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 215
>Z46937-2|CAB60996.1| 444|Caenorhabditis elegans Hypothetical
protein F43C1.2b protein.
Length = 444
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 527 DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW 426
D GF+ EY++TR E+M + G T D W
Sbjct: 250 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 283
>U27124-1|AAA73482.1| 376|Caenorhabditis elegans MPK-1 protein.
Length = 376
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 527 DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW 426
D GF+ EY++TR E+M + G T D W
Sbjct: 182 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 215
>U03879-1|AAA18956.1| 444|Caenorhabditis elegans Sur-1 MAP kinase
protein.
Length = 444
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 527 DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW 426
D GF+ EY++TR E+M + G T D W
Sbjct: 250 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 283
>U50312-10|AAY86208.1| 356|Caenorhabditis elegans Hypothetical
protein B0222.11 protein.
Length = 356
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = -2
Query: 314 LPTLDMTMMKDRCACRWSSCISTMPLGYPFDRPIDMASFFTNNMKFADVMIYRKDLGMSN 135
L T T +C C + ST P P+D + AS + F D+ I R++ +
Sbjct: 37 LITQSTTPASPKCQCLPPTTPSTPPNCIPYDSRLQAASLEEAIVAFPDLTITRQEKTQQS 96
Query: 134 TSKTVDTSEMVMMKDDLTYLDL 69
T+ T++ + +D Y DL
Sbjct: 97 TA-TLNNCKTKQCRD--CYKDL 115
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -1
Query: 642 RLHGQXHERQRQTPRHVRAGQLYVQTGQRKEHHRP*LHGYARIYPRVPFDSSCNGKR 472
R G R +P G+ Y +G R+E +R LHG R P P G R
Sbjct: 533 RKEGFIQPAHRPSPSFRGRGRGYGDSGFRRESYRGGLHGSDRYGPYPPRGGGFRGGR 589
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,607,421
Number of Sequences: 27780
Number of extensions: 329007
Number of successful extensions: 1047
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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