Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14d10
(511 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 30 0.23
SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit L16... 26 3.8
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 26 3.8
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.0
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 25 5.0
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 25 6.6
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 6.6
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 8.7
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc... 25 8.7
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc... 25 8.7
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 29.9 bits (64), Expect = 0.23
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 392 RNTKARQVCIATSPLNISEASISKQSEPAKKK 297
+N+K+R V + +SP N+ ++S + KKK
Sbjct: 561 KNSKSRNVSVFSSPFNVPSFTVSSSDQVQKKK 592
>SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 213
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 356 MWQYTLALLSCSCAGATSIALSLLHLFSSGWTS*LQDG 469
MW T A+L+ + G T S++ L G+ + L DG
Sbjct: 99 MWGTTRAILANNVKGVTMYWQSIIKLVGIGYRTSLNDG 136
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 236 DIKYYYKNVLIRIS-KKYIEIYATIIKNIIKMKTRFEVNFL 117
D+K+++ + ++ KKY+ +Y + I +K EVN L
Sbjct: 147 DVKWFHNHQYFAVAQKKYVYVYDNMGTEIHCLKRHIEVNAL 187
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 162 YNSGVNFNIFFRYPNQYIFIVIFDVHLGPSTLWRVGNPLCP 284
YN ++ F + PN++I + PS R+ LCP
Sbjct: 107 YNENLDQRSFSKTPNKHIEVKNLKDLCSPSHSGRISKSLCP 147
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 477 IPLPSCSQDVQPLENRCSNDKAIEVAPAQ 391
+PLPS ++ +PLE R +D +A Q
Sbjct: 472 VPLPSEMKEAEPLEGRYPSDHVALMANVQ 500
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 25.0 bits (52), Expect = 6.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 350 LNISEASISKQSEPAKKKLLFLRTKGIAHSP*CARPKMDIK 228
L+I E S+SK+SEP+ +L T + S P IK
Sbjct: 582 LSILEGSVSKRSEPSMDSILVQATPRKSSSVITELPDTPIK 622
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 406 FDSFVITTPIFKWLDILTTRWQRYNNTTHLIF 501
FDS +T +FK L++L +++ ++ +IF
Sbjct: 336 FDSTDVTDKVFKLLELLKATYRKSDSVRTVIF 367
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 24.6 bits (51), Expect = 8.7
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +1
Query: 271 IPFVLRNNSFFFAGSDCLLILASDMLRGDVAIHTCLAFVFLCWSYFDSFVITTPIFKWLD 450
+PF L NN F + + L S L + + + VF W Y+ + V+ P +
Sbjct: 4065 LPF-LSNNGKFMSSMMSTVSLPSVRLACQLYGVSIQSLVFFTWGYYIASVLNCPDIVFHT 4123
Query: 451 ILTTR 465
+L+ R
Sbjct: 4124 VLSGR 4128
>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
Nse4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 24.6 bits (51), Expect = 8.7
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = -3
Query: 449 SSHLKIGVV-MTKLSK*LQHRNTKARQVCIATSPLNISEASISKQSEPAKKKLLFLRTKG 273
S +L +G + K + +Q R + + T P ++E +I+ Q K +L +
Sbjct: 131 SLNLMVGPLSFRKKERNIQRRERLQKAPNVLTQPTMLNERNITTQENNTTKNVLHISRLL 190
Query: 272 IAHSP 258
AH P
Sbjct: 191 QAHQP 195
>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 302
Score = 24.6 bits (51), Expect = 8.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 371 VCIATSPLNISEASISKQSEPAKKKLLFLRTKGIA 267
VCI+ +N + + + P KKKL R K IA
Sbjct: 252 VCISVDNINAACSKFEAEGLPFKKKLTDGRMKDIA 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,816
Number of Sequences: 5004
Number of extensions: 42573
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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