Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14d10
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0370 + 17017567-17018335,17018634-17018914,17019012-170192...    29   2.2  
06_03_1510 + 30665857-30666038,30666137-30666236,30666358-306664...    27   8.8  

>09_04_0370 +
           17017567-17018335,17018634-17018914,17019012-17019204,
           17019635-17019798
          Length = 468

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 371 LALLSCSCAGATSIALSLL 427
           L+LL C C+GA SI L+LL
Sbjct: 188 LSLLGCDCSGAVSIELALL 206


>06_03_1510 +
           30665857-30666038,30666137-30666236,30666358-30666438,
           30666514-30666618,30666722-30666916,30667440-30667501,
           30667870-30667885,30668007-30668068,30668933-30668951
          Length = 273

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 364 IHTCLAFVFLCWSYFDSFVITTPIFKWLDILTTRWQRYNN 483
           +H CLAF+F   ++  +F   + +     IL +RW R+++
Sbjct: 12  LHCCLAFLFKFLAFLQAFAAVSALLYAAWIL-SRWARHHH 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,983,743
Number of Sequences: 37544
Number of extensions: 226957
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)