Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14d06
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0440 - 33954726-33954809,33955141-33955475,33955929-339561...    31   0.79 
11_01_0612 + 4902197-4902929,4903443-4904071                           30   1.8  
07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733           29   3.2  

>03_06_0440 -
           33954726-33954809,33955141-33955475,33955929-33956106,
           33956205-33956285,33956629-33956740,33956831-33956931,
           33957001-33957174,33957313-33957486,33957683-33957765,
           33957852-33957912,33958069-33958251,33959630-33959848
          Length = 594

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +1

Query: 94  IHLGVE---NATLTHMG*FHTYTLQLISRVGSGARVNVFAASSGRVSKTVNTRPPLNAFA 264
           IHLG E       T +   H YTL +  +   G  +N+      ++S+++  RPP N F 
Sbjct: 264 IHLGTEMCKKILATGIKTLHLYTLNM-EKSALGILMNLGLIEESKISRSLPWRPPTNVFR 322

Query: 265 V 267
           V
Sbjct: 323 V 323


>11_01_0612 + 4902197-4902929,4903443-4904071
          Length = 453

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -2

Query: 621 SAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLAD 499
           +AA  PN V  ID+       AAA P  + PEAA  P L D
Sbjct: 25  AAAAAPNQVA-IDVVVVHHHGAAAAPGQQAPEAAPVPHLLD 64


>07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733
          Length = 181

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = -2

Query: 636 EGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKT----PEAADAPKLADNPVD--EDKP 475
           +GSA S  I  N  + ++L    +  A  I +       P A D P LAD P +  ED+P
Sbjct: 82  DGSAASFGISINHTRALELPGVCKVQAPPISQCTAVPTPPPAPDTPTLADEPAETNEDEP 141

Query: 474 A 472
           +
Sbjct: 142 S 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,626,263
Number of Sequences: 37544
Number of extensions: 203922
Number of successful extensions: 588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)