Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14d05
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    30   1.8  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    30   1.8  
Z93383-9|CAB07630.1|  281|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF016450-9|AAB65987.3|  295|Caenorhabditis elegans Serpentine re...    28   7.2  

>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 134  ESRGWNIRCNTPPRV*NTEFLEKTQS 211
            E RGW++ CN P R+ +    EK QS
Sbjct: 1626 EVRGWSVLCNDPVRIMSVYIPEKDQS 1651


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 134  ESRGWNIRCNTPPRV*NTEFLEKTQS 211
            E RGW++ CN P R+ +    EK QS
Sbjct: 1747 EVRGWSVLCNDPVRIMSVYIPEKDQS 1772


>Z93383-9|CAB07630.1|  281|Caenorhabditis elegans Hypothetical
           protein F54B8.10 protein.
          Length = 281

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -2

Query: 591 LKNNYFISCLSTM*IVIKSTSKHAICASIKRKT-KILKRALIGFEK 457
           +KN Y+++CL +   V+K+ + + +C ++   T +     LI F+K
Sbjct: 61  IKNTYYLACLISRLFVVKNLALYLLCPTLLCSTVRATLAFLISFDK 106


>AF016450-9|AAB65987.3|  295|Caenorhabditis elegans Serpentine
           receptor, class t protein69 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +2

Query: 620 FLVSTLYCIMTSFYIA-IPIMLL 685
           F++ T+ CIM SF++A +P+M L
Sbjct: 73  FVIRTIGCIMNSFWVADLPVMTL 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,859,772
Number of Sequences: 27780
Number of extensions: 259305
Number of successful extensions: 543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)