Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14d04
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    30   0.20 
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   5.6  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   5.6  
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   5.6  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   9.7  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   9.7  

>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 219 RYHLEQFLRALPMEHTVQNTEGTEVPPQTQ 308
           RY LEQ L+  P+EH +  TE  + PP+ +
Sbjct: 85  RYGLEQQLKTNPLEHPILITEPFDNPPENR 114


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 124 LWKRTVDDRSGSR*YG*TLLRWRAVRW 204
           +WK  V+DRSG +  G T   W+   W
Sbjct: 558 VWKLLVNDRSGGKHEG-TFENWQLALW 583


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 261 HTVQNTEGTEVPPQTQRFQTIRETGTI 341
           HT++N EG +  P  Q     R TG++
Sbjct: 53  HTLENQEGDDERPLIQHHMVNRSTGSL 79


>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 458 LSILTYI*AKAMAYGRAMIFYHIKLGYPAVGWKIALLAPNCPGLTDRL 315
           L +L +    ++ +G  +    + LG+P+VG++  LL P    L +RL
Sbjct: 63  LIVLLFSLMFSLTFGSLLGLISLALGFPSVGYRYVLL-PILNALLNRL 109


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 95  IAGWYVAKKTSGNA-LWMTAVAPGSMDELYSGGGRCDG 205
           I  +Y A    G+  + M  +  GSMD+LY+GG + +G
Sbjct: 378 IVDFYGAFFVEGSVFICMEYMDAGSMDKLYAGGIKDEG 415


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 280 REPKSLRRPRGSKRSVRPGQLGARSAIFHPTAGYPNL 390
           R P S+     SKR   P +  AR  + HPT+ Y  +
Sbjct: 414 RPPPSIASSPESKRRKCPKKFVARPPVPHPTSLYSQI 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,255
Number of Sequences: 5004
Number of extensions: 55554
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)