Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14d04
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050...    29   2.4  
02_01_0171 - 1179095-1179388,1179668-1179801,1180036-1180900,118...    28   4.3  
01_06_1100 + 34530132-34530485,34530544-34530705                       28   5.6  
01_06_0634 + 30746767-30747012,30747083-30747118,30747554-307478...    28   5.6  
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301...    27   7.5  
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241...    27   7.5  
02_02_0379 + 9565001-9565515,9565553-9565833,9565884-9566084,956...    27   7.5  
11_06_0348 - 22561589-22563656,22563788-22564602                       27   9.9  
10_01_0089 + 1103841-1104152,1104809-1104946,1105527-1105631,110...    27   9.9  
07_03_0228 + 15406193-15406356,15406437-15406584                       27   9.9  
04_03_0190 + 12448027-12450825                                         27   9.9  
01_01_1059 - 8356328-8356645,8357567-8357865,8358119-8358124,835...    27   9.9  

>04_04_0161 +
           23203786-23203848,23204141-23204180,23204865-23205016,
           23205270-23205406,23206356-23206396,23206500-23207098,
           23207599-23207679,23208146-23208208,23209141-23209197
          Length = 410

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 220 GIISNNSSEHSPWNIRYKIQREPKSLRR 303
           G+ SN  +E +  ++R K+ R+PK++RR
Sbjct: 161 GLSSNGGAEQNGVDLREKLSRKPKNIRR 188


>02_01_0171 -
           1179095-1179388,1179668-1179801,1180036-1180900,
           1180998-1181258,1181424-1181621,1181752-1181982,
           1185337-1185648,1185750-1186247
          Length = 930

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 92  NELPSTVFPERYDMSFFKRGXWRVLSG 12
           N+   T +  RY+M+F K G W++  G
Sbjct: 899 NDSYDTKYTTRYEMAFSKLGGWKITEG 925


>01_06_1100 + 34530132-34530485,34530544-34530705
          Length = 171

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 197 TARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVF 69
           +A+H    H   L+ L+  T + +   +   + L+NEL ST+F
Sbjct: 105 SAKHLDTAHSVVLKELKKPTGQQEARDVTNQLELFNELKSTLF 147


>01_06_0634 +
           30746767-30747012,30747083-30747118,30747554-30747850,
           30748482-30748544,30748643-30748696,30748837-30748854,
           30749554-30749625,30749731-30749787,30750160-30750236,
           30751013-30751094,30751585-30751701,30752083-30752210,
           30753074-30753143,30753725-30753765,30753963-30753990,
           30754151-30754210
          Length = 481

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 184 GVEFIHT-TWSHCGHPQCVSRGLFCHVPSGY 95
           G+ ++ T +W HCG+    + GL  HVP  Y
Sbjct: 444 GLAYLRTESWVHCGNGMKQAIGLKFHVPEEY 474


>07_03_0968 -
           23027940-23028149,23028800-23029002,23029610-23030138,
           23030342-23030579,23031121-23031168,23031199-23031494
          Length = 507

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 318 FGTSGSAEGLRFPLYFVPYVPWGVL*GIVRDDTGISFL 205
           +G SG+AEGL   + F   +    L G++ D  G SFL
Sbjct: 64  WGVSGAAEGLVSSVVFAGMLIGACLGGLISDRYGRSFL 101


>04_04_0397 -
           24921892-24922947,24923486-24923734,24923807-24924157,
           24924244-24924331,24924466-24924563,24925141-24925362,
           24925490-24925585,24926410-24926481,24927156-24927305
          Length = 793

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 203 GKNEMPVSSRTIPQSTPHGTYG-TKYRGNRSPSADPEVPNDP*DRDN 340
           G+ E  V  +T  Q+ PH  YG T  R  R+ +  P   N+    DN
Sbjct: 101 GRPESDVQVQTQTQAQPHNRYGETDNRDWRARTVQPPAANEEKSWDN 147


>02_02_0379 +
           9565001-9565515,9565553-9565833,9565884-9566084,
           9566253-9566309,9566955-9567019,9567199-9567420
          Length = 446

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 81  GELIP*PDGTWQKRPLETH 137
           GEL+P PD +W+ RPL+ H
Sbjct: 378 GELLPMPDPSWE-RPLKPH 395


>11_06_0348 - 22561589-22563656,22563788-22564602
          Length = 960

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +3

Query: 228 LEQFLRALPMEH-TVQNTEGTEVPPQTQRFQTIRETGTIRGKERDLPSD-CRIS*LNVVE 401
           L Q  + L + + +V NT+ +++PPQ +  +T+           ++PS+ C    L +++
Sbjct: 582 LLQICKMLVLSYLSVSNTKVSKLPPQIKELRTLNALDISHTHISEIPSEVCEPGSLRMLD 641

Query: 402 NHSSAISH 425
              + I H
Sbjct: 642 LRGTQIKH 649


>10_01_0089 +
           1103841-1104152,1104809-1104946,1105527-1105631,
           1106403-1106577,1107124-1107398,1108222-1108391,
           1108508-1109084
          Length = 583

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 398 YHIKLGYPAVGWKIALLAPNCPGLTDRLEPLGLRRDFGSL 279
           Y  K G PA+  K  L+  N  GLT   + LG+  D  ++
Sbjct: 380 YADKAGNPAIQTKYQLIRMNSKGLTGGFKCLGMLEDIRAI 419


>07_03_0228 + 15406193-15406356,15406437-15406584
          Length = 103

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 112 GKKDLWKRTVDDRSGSR*YG*TLLRWRAV 198
           G    W+RTV  R GS   G T+ +W  V
Sbjct: 24  GSTGRWRRTVAPREGSGTAGSTMTKWHRV 52


>04_03_0190 + 12448027-12450825
          Length = 932

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 288 EVPPQTQRFQTIRETGTIRGKERDLPSDC-RIS*LNVVENHSSAIS 422
           EVP Q      +R  G  R K + LPS   R++ L  ++ H S IS
Sbjct: 598 EVPKQVVSLFNLRYLGLRRTKVKKLPSSLGRLANLQTLDLHHSCIS 643


>01_01_1059 -
           8356328-8356645,8357567-8357865,8358119-8358124,
           8358276-8358720,8359722-8360036
          Length = 460

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 155 APGSMDELYSGGGRCDGKN--EMPVSSRTIPQSTPHGTYGTKYRGNRSPS 298
           AP S  + Y      DG++  +MP  S+  PQ+     YG K R  +S S
Sbjct: 222 APRSQSKGYYNERPLDGRSHDDMPKFSKESPQARASANYGAKGRPAQSKS 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,233,047
Number of Sequences: 37544
Number of extensions: 414527
Number of successful extensions: 1089
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)