Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14d04
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AC024876-12|AAF60896.2|  498|Caenorhabditis elegans Hypothetical...    28   5.1  
Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 160 WSHCGHPQCVSRGLFCH 110
           WS C HP CV+  +F H
Sbjct: 12  WSRCVHPSCVAWVIFIH 28


>U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical
           protein C02F12.8 protein.
          Length = 687

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 145 HPQCVSRGLFCHVPSGYGMSSPPRCFPSAMT 53
           HPQ V++ +  HVP G    +PP+  P+  T
Sbjct: 162 HPQIVNQPMHPHVPVGSQNYNPPQFVPAPPT 192


>AC024876-12|AAF60896.2|  498|Caenorhabditis elegans Hypothetical
           protein Y94H6A.1 protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -1

Query: 248 CSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPST 75
           CS E F+ +    F  +TA HR+      +EP+ S  V  +   L + I +++E PST
Sbjct: 332 CSAEWFQELSGLSFEAQTAVHRAISE--IMEPMDSLDVSIEELVLMKFIMMFSE-PST 386


>Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical
           protein T28A8.2 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 80  RGAHSIAGWYVAKKTSGNALWMTAVAPGSMDELYSGG 190
           + AHS  GW++   + GN ++   +  G+ D +Y  G
Sbjct: 265 KAAHSTFGWWMGYLSKGNQVYYADIR-GTNDSVYKTG 300


>U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical
           protein T09D3.3 protein.
          Length = 592

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/54 (27%), Positives = 20/54 (37%)
 Frame = -2

Query: 217 HLVFTIAPPATGVEFIHTTWSHCGHPQCVSRGLFCHVPSGYGMSSPPRCFPSAM 56
           H +  +  PA   +       HC   QCV+R  + H    Y     P C P  M
Sbjct: 264 HPLVLVVHPAPQAQCSPACQPHCSQ-QCVARLQYMHESQFYNHILEPSCRPDCM 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,866,591
Number of Sequences: 27780
Number of extensions: 318743
Number of successful extensions: 870
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)