Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14d04
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.2  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 247 HSPWNIRYKIQREPKSL 297
           H PWN    +QR  K +
Sbjct: 462 HEPWNAPLNVQRAAKCI 478


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 206 KNEMPVSSRTIPQSTPHGTYGTKYRGN-RSPSADPEVPNDP 325
           +++ P S    PQ +PH +     RG+  +PS  P  P  P
Sbjct: 12  QSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPP-PGGP 51


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 379 ILQSDGRSRSLPLIVPVSRIVWNLWV 302
           IL+S   +     + P   +VWN W+
Sbjct: 452 ILESGTTTLQTRTMHPYDHLVWNSWM 477


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = -2

Query: 73  CFPSAMTCPSSNEAXGE 23
           C P  + CP  N   GE
Sbjct: 436 CLPEEILCPHFNVTDGE 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,977
Number of Sequences: 438
Number of extensions: 4378
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)