Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14d01
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    93   1e-20
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    25   3.9  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    25   5.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   5.2  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   6.9  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    24   9.1  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    24   9.1  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    24   9.1  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 93.1 bits (221), Expect = 1e-20
 Identities = 50/108 (46%), Positives = 66/108 (61%)
 Frame = -2

Query: 329 VKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 150
           +K  ELR +               L +LRV K+ GG  SKLSKI+  RK IAR+  V ++
Sbjct: 3   LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINE 62

Query: 149 KMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKK 6
             ++  R  YKNKKY PLDLR KKTRA+R+ALT +E   KT K+I+K+
Sbjct: 63  SNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKKE 110


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -2

Query: 113 KKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKS 3
           K Y+P   R   ++++   +TK   K   +K  +K S
Sbjct: 171 KSYRPKASRTTSSQSVASTMTKSSTKTSKKKSSKKNS 207


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -2

Query: 128 NHYKNKKYKPLDLRAKKTRAMRKAL---TKHEAK 36
           +H KN++Y  L+ + +K     KAL   TKH  K
Sbjct: 35  SHIKNRQYYILEKKIRKLMFAMKALLEETKHSTK 68


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -2

Query: 161 VYHQKMKVN---LRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK 36
           VYHQK K+N   L    + +K  PL+ R      + K +T    K
Sbjct: 79  VYHQKTKINDKLLSETEQLRKIYPLESRVFPKPTIVKEITNERTK 123


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 95  DLRAKKTRAMRKALTKHEAKIKTRKEIRKKS 3
           D++ K  RAMR+ +   +   +  +++RKK+
Sbjct: 677 DMQTKAKRAMRETMVFWKRNERVERDLRKKA 707


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 119 KNKKYKPLDLRAKKTRAMRKALTKHEAKIKT-RKEIRK 9
           ++ +YK  DL+ +K +   K L+  EA+ K   +++R+
Sbjct: 187 RDGRYKSEDLKRRKLQPSSKPLSSLEARAKVIMRQVRR 224


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 180 SFSYNTDLGQFRSNSTSNFSNPK 248
           +F+Y+ D G FR  + +NF +P+
Sbjct: 262 AFNYHFDNGVFRGLAFANFHSPE 284


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 104 KPLDLRAKKTRAMRKALTKHEAKIKTRKE 18
           KP+DLR +  R  R  +T  + +  T  E
Sbjct: 141 KPVDLRTQHNRPQRPVVTPAKRRFNTTPE 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,242,946
Number of Sequences: 5004
Number of extensions: 18863
Number of successful extensions: 66
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)