Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14d01
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal prote...   103   6e-23
Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    29   0.83 
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    29   0.83 
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    29   0.83 
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    27   3.4  
Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical pr...    26   7.8  

>L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 35 protein.
          Length = 123

 Score =  103 bits (246), Expect = 6e-23
 Identities = 55/110 (50%), Positives = 68/110 (61%)
 Frame = -2

Query: 338 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 159
           M K+KC  LR +               L  LRV+KVTGG ASKLSKIRVVRK IAR+  V
Sbjct: 1   MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60

Query: 158 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 9
            +Q  K  LR  Y + KYKP+DLR KKTRA+R+ LT HE  +++ K+  K
Sbjct: 61  INQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAK 110


>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 119 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 6
           K   ++ +D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 268 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 306


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 119 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 6
           K   ++ +D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 119 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 6
           K   ++ +D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 158 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKK 6
           + QK K  ++   K+KK K    + KK +   K   K + + + R+E RKK
Sbjct: 288 FEQKKKKKVKKSKKSKKDKK---KEKKEKKKSKKANKEKEERRARREQRKK 335


>Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical
           protein T13F3.2 protein.
          Length = 391

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 158 YHQKMKVNLRNHYKNKKY-KPLDLRAKKTRAMRKALTKH 45
           Y  ++  +L NHYKN  + +    R  K  A+ K+L KH
Sbjct: 332 YTNQLASDLHNHYKNDLHLEQYAQRVLKMMAIVKSLQKH 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,860,742
Number of Sequences: 27780
Number of extensions: 105230
Number of successful extensions: 352
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)