Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14c23
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated p...    30   1.1  
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p...    30   1.1  
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p...    30   1.1  
AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucle...    30   1.1  
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle...    30   1.1  

>U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated
            protein 73, isoform b protein.
          Length = 1638

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 582  TNDNRIKEK-TNHHSTTSNVSDLRSITGTMIQLNL 481
            +NDNRI  K  NHH+    V  +R +T  M+ L L
Sbjct: 1484 SNDNRIDLKANNHHTKVKWVQKIRDLTAGMLPLGL 1518


>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
            protein 73, isoform f protein.
          Length = 2140

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 582  TNDNRIKEK-TNHHSTTSNVSDLRSITGTMIQLNL 481
            +NDNRI  K  NHH+    V  +R +T  M+ L L
Sbjct: 1484 SNDNRIDLKANNHHTKVKWVQKIRDLTAGMLPLGL 1518


>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
            protein 73, isoform a protein.
          Length = 2488

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 582  TNDNRIKEK-TNHHSTTSNVSDLRSITGTMIQLNL 481
            +NDNRI  K  NHH+    V  +R +T  M+ L L
Sbjct: 1484 SNDNRIDLKANNHHTKVKWVQKIRDLTAGMLPLGL 1518


>AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucleotide
            exchange factorUNC-73B protein.
          Length = 1638

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 582  TNDNRIKEK-TNHHSTTSNVSDLRSITGTMIQLNL 481
            +NDNRI  K  NHH+    V  +R +T  M+ L L
Sbjct: 1484 SNDNRIDLKANNHHTKVKWVQKIRDLTAGMLPLGL 1518


>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucleotide
            exchange factorUNC-73A protein.
          Length = 2488

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 582  TNDNRIKEK-TNHHSTTSNVSDLRSITGTMIQLNL 481
            +NDNRI  K  NHH+    V  +R +T  M+ L L
Sbjct: 1484 SNDNRIDLKANNHHTKVKWVQKIRDLTAGMLPLGL 1518


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,278,911
Number of Sequences: 27780
Number of extensions: 224062
Number of successful extensions: 522
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)