Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14c19
         (675 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    26   0.25 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.3  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    21   7.0  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   7.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.0  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    21   7.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.0  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 633 LVQICKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTG 520
           L  + ++  VYP+     C   + E++ SD P +P  G
Sbjct: 182 LETLSQLMDVYPNNDGTKCLVVTDEASISDAPFFPHRG 219


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -1

Query: 603 YPHP--APEGCTSASSESAPSDQPIYPDTG 520
           YP+P  +PE    A+S   PS  P+ P  G
Sbjct: 172 YPYPILSPEMSQVAASWHTPSMYPLSPGAG 201


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -1

Query: 603 YPHP--APEGCTSASSESAPSDQPIYPDTG 520
           YP+P  +PE    A+S   PS  P+ P  G
Sbjct: 64  YPYPILSPEMSQVAASWHTPSMYPLSPGAG 93


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 284 VLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESG 153
           VLF+  +   +GV Y ++ G+SR   + +    T LAL ++  G
Sbjct: 33  VLFVIIVAGNVGVLYTLLFGRSRKSRMNY--FITHLALADLSVG 74


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 396 TKEAQHHPIRHKHSHQA 346
           TK   HH I+ +H HQ+
Sbjct: 101 TKFNPHHEIKLQHLHQS 117


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 570  ASSESAPSDQPIYPD 526
            ASS  APS  P+ PD
Sbjct: 2288 ASSTMAPSTTPMVPD 2302


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 152 DRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKL 24
           D+ +F  ++  +K+  N + + L     GG+   K +  IAK+
Sbjct: 154 DKVNFVTLLGELKSALNAKGKTLSAAVSGGIASCKLSYDIAKV 196


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 83   RKHWGGGVLGNKSNARIAKLEK 18
            R+ W G +LG     R+A  +K
Sbjct: 1021 REEWNGDILGYYVGYRLANSDK 1042


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,379
Number of Sequences: 336
Number of extensions: 2717
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)