Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14c19
(675 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 268 2e-72
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 194 4e-50
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 58 9e-09
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 45 5e-05
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45) 35 0.069
SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35) 31 0.85
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7) 28 6.0
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) 28 6.0
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 6.0
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 268 bits (658), Expect = 2e-72
Identities = 124/216 (57%), Positives = 158/216 (73%)
Frame = -2
Query: 650 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 471
IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ + LFK+L KYRP
Sbjct: 45 IQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRP 104
Query: 470 ETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPI 291
ET K+P ++ G N +T LVE KKAQLVVIAHDVDPI
Sbjct: 105 ETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQLVVIAHDVDPI 164
Query: 290 ELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKT 111
E+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V D+ S + ++E++KT
Sbjct: 165 EIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNSLNNLIESVKT 224
Query: 110 NFNERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 3
N+NER++E+RKHWGGG++G KS A AK+EKAK RE
Sbjct: 225 NYNERFDEIRKHWGGGIMGPKSLAATAKVEKAKLRE 260
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 194 bits (474), Expect = 4e-50
Identities = 91/166 (54%), Positives = 116/166 (69%)
Frame = -2
Query: 500 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQL 321
LFK+L KYRPET K+P ++ G N +T LVE KKAQL
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63
Query: 320 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRAS 141
VVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V D+ S
Sbjct: 64 VVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNS 123
Query: 140 FSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 3
+ ++E++KTN+NER++E+RKHWGGG++G KS A AK+EKAK RE
Sbjct: 124 LNNLIESVKTNYNERFDEIRKHWGGGIMGPKSLAATAKVEKAKLRE 169
>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
Length = 187
Score = 57.6 bits (133), Expect = 9e-09
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = -2
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 204
+R G N TK + + A+ +V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 94 LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALGRATG 153
Query: 203 VHRKTCTCLALTNVESGDRASFSKVVEAIK 114
V R C N S + + AI+
Sbjct: 154 VTRPVIACAVTVNEGSQLKPQIQTLQNAIE 183
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 45.2 bits (102), Expect = 5e-05
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -2
Query: 389 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 222
+ T+R G V K + K + V++A DV PI+++ +P +C +PY V K
Sbjct: 95 KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150
>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
Length = 427
Score = 34.7 bits (76), Expect = 0.069
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -2
Query: 368 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 210
G + K ++K++A L +++++ D V + ALC + G+P V +LG
Sbjct: 41 GLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLG 93
>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
Length = 1898
Score = 31.1 bits (67), Expect = 0.85
Identities = 16/62 (25%), Positives = 34/62 (54%)
Frame = -2
Query: 269 ALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYE 90
A C++ + +++GK + AL+ +KT L + V R S + VV+ ++ +E+Y
Sbjct: 1206 ASCKRCRDEFTVIRGKEK--ALLGKKTAEQLKVLGVGPETRESVNAVVKGSDSDIHEQYS 1263
Query: 89 EL 84
++
Sbjct: 1264 DI 1265
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -2
Query: 233 VKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 84
VKGK+ LG +KT L + V R S S VVEA ++ E+Y ++
Sbjct: 1092 VKGKALLG----KKTAEQLKVLRVGPETRESVSAVVEASDSDIREQYSDI 1137
>SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -2
Query: 242 YCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 84
+ +++GK + AL+ +KT L + V S S VVEA ++ E+Y ++
Sbjct: 338 FTVIRGKGK--ALLGKKTAEQLKVLRVGPETGESVSAVVEASDSDIREQYSDI 388
>SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)
Length = 189
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 58 RTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDST 165
R + +RS S RSL L ST+ EKEA+ D+T
Sbjct: 113 RVRKKEIIRSGSSRSLPECLRISTSKEKEAKDIDNT 148
>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
Length = 437
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 133 FEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 234
F + +S R +H H+ RCTSAP P T
Sbjct: 61 FNNFTNTTESWPQRKRHFHLRRCTSAPEPSSPNT 94
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 387 PLWWRLIFLGNLSFSSFPQPLFPG 458
P WW ++F+G + FS L+PG
Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 576 TSASSESAPSDQPIYPDTG 520
T+ASSE+APS P PD G
Sbjct: 43 TAASSEAAPSSAPSMPDYG 61
>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 832
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 629 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 480
SR RW Y R+ KA+LQR ++ I Q T + K +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,960,210
Number of Sequences: 59808
Number of extensions: 359858
Number of successful extensions: 1286
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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