Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14c18
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   4.4  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   5.8  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   7.7  

>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 457 LIFRHFTHNMYLFSLSNTFIYEKHICFYFVLIILT 353
           L F  F     +   S++FI E+H+ +YF  + L+
Sbjct: 432 LAFAPFVVQNIIIVFSSSFIEEEHVIWYFAAVSLS 466


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 58  PIFEMKGKIITKNYYK 105
           PI E+KG++ T+N YK
Sbjct: 240 PIMEVKGRVCTQNEYK 255


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 486 SLKNLRALNLPYVP*QILIQHKIHC 560
           SL+NL++L+  Y+P +I+  H I C
Sbjct: 588 SLRNLKSLSHSYLPIEIMKGHIIVC 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,183
Number of Sequences: 5004
Number of extensions: 38413
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)