Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14c16
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    27   2.5  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    26   4.3  

>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +3

Query: 81  D*HLFRIIKYVSIQTFKHSKEIKSKLNKIHPN 176
           D  LF +I ++ ++ +   K + + + K+HPN
Sbjct: 229 DVDLFLLIGHIPVRDYDEWKSLHASIRKVHPN 260


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 422 NNISLELSVVRYVDKYSHNDNYFF 351
           NN+++  ++ RY   Y HN+  F+
Sbjct: 184 NNLNIACTIARYNSAYEHNNKLFW 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,319,147
Number of Sequences: 5004
Number of extensions: 40700
Number of successful extensions: 70
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)