Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14c13
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248...    29   3.5  
06_01_1082 - 8847795-8848033,8848511-8848724                           28   8.0  

>06_03_1104 +
           27623632-27623795,27624052-27624175,27624316-27624832,
           27624943-27625073,27625161-27625567,27625690-27625963,
           27626195-27626814,27627424-27627859
          Length = 890

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -2

Query: 591 GNTMEYCYKLWVGNGQDIVKKYFPLSFRLIMAGNYVKLIYRNYNLALKLGSTTNPSNERI 412
           G   +YC    V +  D+  +   L   L + GN   ++  N +L  K+G+    SN  I
Sbjct: 244 GKLAQYC----VASEMDVAVRVLKLYAALALCGNGAMVLLNNEDLMAKVGALLGKSNPSI 299

Query: 411 A 409
           A
Sbjct: 300 A 300


>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 264 ARDRVVYGGNSADSTR--EQWFFQPAKYENDVLFFIYNREFND 142
           A  +  Y G++A   R  + W      Y  DVL F YN+E++D
Sbjct: 39  AGGKTYYVGDAAGWGRNLDWWLAGKTFYAGDVLVFKYNKEYHD 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,359,593
Number of Sequences: 37544
Number of extensions: 341093
Number of successful extensions: 1013
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)