Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14c13
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    27   0.22 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = -1

Query: 646 ARAASFKNVVNNLIIDKRREHHGVLLQAVGRQRTGYCQKVLPIKL*THHGRKLRQAHLQK 467
           A   SF  +++N  ++KR  H+   +   GR  + +   +    +     R+LR+AH +K
Sbjct: 567 AATLSFCEMIHNAQVNKRSIHNNYPVHTFGRLTSKHDNSLYDEYI-PFLERELRKAHQEK 625

Query: 466 LQPR 455
             PR
Sbjct: 626 DSPR 629


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 19  SGRLERCNEPRVDFRK 66
           SG+LER  E R+  RK
Sbjct: 554 SGKLERTEEQRIALRK 569


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 19  SGRLERCNEPRVDFRK 66
           SG+LER  E R+  RK
Sbjct: 592 SGKLERTEEQRIALRK 607


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 307 QPVLEDEYVDLQLQRSG 257
           +PV+ +E VD  L++SG
Sbjct: 168 KPVVAEETVDYMLEKSG 184


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 189 YENDVLFFIYNREFNDALELDTIVNASGDRKAVGHDGEV 73
           Y+N +++ IY R F D+ + D I + +G    + H  ++
Sbjct: 27  YKNALVYQIYPRSFQDS-DGDGIGDLNGITARMDHIADI 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,234
Number of Sequences: 438
Number of extensions: 4355
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)