Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14c09
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    96   4e-21
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   1.9  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   7.8  

>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 96.3 bits (229), Expect = 4e-21
 Identities = 42/94 (44%), Positives = 59/94 (62%)
 Frame = -1

Query: 696 IITLNGGXPANFLDLGGGVGQSQVSAALKILESDPKVKTIFVNVFGGIVNCATIANGIVS 517
           II L+GG PANFLD+GG      +  A  ++ +DPK   IFVN+FGGIV C  IA G++S
Sbjct: 304 IIKLHGGEPANFLDVGGNANAEAIREAFSLITNDPKTTAIFVNIFGGIVRCDVIAKGLIS 363

Query: 516 ACRENPPKHPLVIRLEGTNSGEARKILEQSGLPV 415
                    P++ RL+GTN G A++++  SGL +
Sbjct: 364 VVSALNLNIPIICRLQGTNQGAAKEVINNSGLRI 397


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 552 QYLQKH*RKSSSLWDQTLKSSKLQKLVID 638
           +++ +  RK   LW  T+   K+QKLV+D
Sbjct: 835 EFVNRDARKEFFLWALTINDPKVQKLVLD 863


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1040

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 663  FLDLGGGVGQSQVSAALKILESDPKVKTIFVNVFGGIVNC-ATIANGIV 520
            +L   GG+  ++ + AL   E DP V+ + +++  G V    T AN ++
Sbjct: 910  YLMYTGGLSTAERNQALINFEVDPNVRVLLISLKAGNVGLNLTCANHVI 958


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,706
Number of Sequences: 5004
Number of extensions: 49548
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)