Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14c09
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0655 + 24761323-24761424,24761565-24761675,24762361-247624...    36   0.023
03_06_0673 - 35446537-35446629,35447001-35448548                       30   2.0  
10_08_0669 + 19742140-19742189,19742886-19742923,19744260-197444...    29   4.7  

>02_04_0655 +
           24761323-24761424,24761565-24761675,24762361-24762472,
           24763049-24763113,24763727-24763804,24764550-24764624,
           24764747-24764899,24764988-24765122,24765325-24765495
          Length = 333

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = -1

Query: 696 IITLNGGXPANFLDLGGGVGQSQV 625
           II L+GG PANFLD+GG   + QV
Sbjct: 310 IIKLHGGTPANFLDVGGSASEGQV 333


>03_06_0673 - 35446537-35446629,35447001-35448548
          Length = 546

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -1

Query: 657 DLGGGVGQSQVSAALKILESD-PKVKTIFVN--VFGGIVNCATIANGIVSAC 511
           D+ GG+  SQV   +K LE D  KV  + V    + GI  C+ I  GIV+ C
Sbjct: 171 DIAGGITPSQVDKVVKELEEDRKKVGAVLVTSPTYHGI--CSNI-QGIVNVC 219


>10_08_0669 +
           19742140-19742189,19742886-19742923,19744260-19744448,
           19746402-19748188
          Length = 687

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = -1

Query: 651 GGGVGQSQVSAALKILESDPKVKTIFVNVFGGIVNCAT--IANGIVSACRENPPKHPLVI 478
           G  + QS  + ALK L + P+V+        GIV      +  G+V  C+E   +   + 
Sbjct: 416 GDSISQSAAAGALKNLSAVPEVRQALAE--EGIVRVMVNLLDCGVVLGCKEYAAE--CLQ 471

Query: 477 RLEGTNSGEARKILEQSGL 421
            L  +N G  R ++ + GL
Sbjct: 472 SLTSSNDGLRRAVVSEGGL 490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,196,319
Number of Sequences: 37544
Number of extensions: 307211
Number of successful extensions: 767
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)